RNA id: AMCG00010556


Basic Information

Item Value
RNA id AMCG00010556
length 5078
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00010556
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35216218 ~ 35250157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGTAAATCACGACAATGACCACCCATCCTGTGCGGACAGCCTCCATATCATGTCTGGAGAGTGGATCAAAGGCCAGAACCTTGGCGATGTCTCCTGGTCTCAGTGCAGCAGGGAGGATGTTGAAAGGTTCCTCAGGTCGAAGGCGAGCAGTTGCTTGTTGCAGACCGATCCTATGAGCCTCAACTCTGTGATCCTGCCCTCTAAACTGCCTGGGATGACATACACGGCCGACGAGCAGTGCCAGATACTGTTTGGGCCCAAGGCATCTTTCTGTCACAAAATGCAGCACGTCATTTGCTCTGGGCTGTGGTGCCGAGTGGAAGGGGAGAAGGAGTGTAAGACCAAGCTTGACCCCCCATTGGATGGAAGTGAATGTGACATGGGAAAGTGGTGCCGAGCGGGCGAGTGTGTAAGCCGGGCCCTCCTGCCCGAGCACACACATGGAGAGTGGAGTTCCTGGGGGCCCTGGGGAGCCTGCAGCCGGACCTGCAGCACGGGGATCATTGCTCGGCAACGCAAGTGTGACAATCCCAGACCCAGTGCTAAAGGGAGGGACTGCCCTGACTCCAGGATGCAGTATAAAGTGTGTGAGAATGTGCCCTGTCCGGCGGGAGTGCCTGCCTTCAGGGACCTGCAGTGCCAGACTTTCAACCGGCCGTCCTTTCAGAAGCACGCCCTCCACTGGTACTCTGTAATGGACGATGAGAAACCCTGCACCTTGTTCTGTTCCACGTCTGGGAAGGAGCAACCGGTGCTCTTAGCAGAGAAAGTGCTGGATGGGACATCTTGTGGCCCTCAGGAGTCTGGGATCTGTGCTAATGGGACGTGTCAGAAAGTGGGCTGTGATGGCATTCTTGGATCCTCTTCCAGGGAAGACCATTGTGGCATCTGCAATGGAAACGGGAAGTCATGCAAAGTCATCAAAGGAGACTTCAACCACACCAGAGGAGCAGGTTATGTTGAAGCCGTGGTCATACCTGCAGGGGCAAGACGAATCAAAGTAGTGGAAGAGAAGCCGGCCCATAGCTATTTAGCACTTCGAGATGCCAGCAAGCAGTCCATCAACAGCGACTGGAAGATTGAGCACCCCGGTTCCTTTAACATCGCTGGCACAACGGTCCATTATGTCAGAAGGGGATTGTGGGAGAAAATCTCTGCGAAAGGCCCCACTACTTCACCTTTACATCTTTTGGTGCTGCTGTTCAATGACCAGAATTATGGCATCCATTACGAGTACACCATCCCCACGGAGCCCCTGCCCGAGAACCAGAGCAGCAAGGCCTCGGAGGCGCTCTTCATGTGGACGCACTCGGGCTGGGAGGACTGCCATGCCATGTGTGGTGGAGGGGAAAGAAAGACAATAGTGTCCTGCACCAAGATCCTGAACAAGACAACCAGTGTGGTAGACAACCGGAGGTGCCGCCACCTGACCAAACCTGAGCCCCAAGTACGCAAGTGTAACGATCAACCCTGCCAGACCAGGTGGATGATGACAGAGTGGACCACTTGCTCCAGGACGTGTGGAAAGGGATCTCAGGGCAGACAGGTGGCCTGTACACAGCAGCTCCCCAACGGCACTCTCATCAAGGCCAAAGACAGAGACTGTGCTGGTCCCAAACCTACGTCCACCCAGCGTTGTGAGGGACAGGACTGTATGACCGTGTGGGAGGCAGGAGTGTGGTCTGAGTGCTCCGTGAAGTGCGGCAAAGGGGCCCGCCACCGCAGCGTGAAGTGCACCAACCCCCGCAGGAAGTGTGACCTGTCCACGCGGCCCCGCGAGGTGGAGGACTGCGAGGACTACTCCAAATGCTACGTCTGGAGAACAGGAGACTGGTCCAAGGTTTGCTCGGTCACCTGTGGGAAGGGGATGCAGTCCAGGGTGATTCAGTGTATGCACAAGATCACAGGTCGACACGGCAATGAATGCTTCTCTTCGGAGAAACCCGCGGCCTACAGACCCTGCCACCAGCAGCCCTGCAACGAGAAAGTGAATGTGAACACCATTACCTCCCCAAGACTAGCTGCCTTAACGTTCAAGTGCCTGCGAGACCAGTGGCCGGTGTACTGTAAAGTAATACGAGAGAAGAACCTGTGCCAGGACATGCGATGGTACCAGCGCTGCTGTGAGACCTGTAGAGACTTTTACGCACAGAAAATGCAGCAGAAGAGTTGACAACAGTGTACACACGCAACATAAACCCcaaatttatttatattaactaAATGCACACAAATGAAACCAATACTTTCCCACCAGGTAATTTAATTGGTGTAATTTATTCTTATACTCTGTGTTTCAGATATGTCTGTGGAAAAACACAATATGTTTTACactaaatgtgcatttttttgtaatcaatGTCACTTTTGGAAGCAATGTTCACTGTGTCTGAAAGTAATGGAGCGACTCACGATGCCACCACAGTGTCTATACTGTACAGATGACACATGAAATGGAAATGCATCTTGGACTGGGTATTACACAATTGGGTGCAGAGAAGAGAAATTGATGCCATTACCCCAAAGCATCTTAAACATCGTTGGTACTTATTAGGAGGACAAAATATTGCAGCTCATATCTCTGCATTAATATCACGGGGGGCTGGAGGCCTTTCGTGTTCGTTACAGTCTTGTTATTGCGACAGATTccaaatatttctgttttttctttgaagtCAACTATGCAGACTTTCTGTCCTCAAGAGCAACTActcaaacaaatatgaaataatctCTGAGTTGCATCGCAGTGGatcttattgttgttgttttttgtttttttagtgcTGATGACTAAATTGTGATTTGGGCTACAATCTATATTTCCGATATGTATGTttagaacacaaattaaatgctgCCCCTGACCACCTGATACTACTTTTAAACGTCCgctgaagctttttttttttgtctgcttcATAATAGAATATATGGTGTCTTCATCTAATCAATACTCTGTTTCACAGAAAGACTTAAGGCAATTCAATCTCTTCTCATTCTTCAAACATTTTGAGGCAAGCTTGAGGCATGTGCGAACTGGAATCCACATAAATACAATGTCTGTGCGGAGCGTctgataacatttatttaaatattatttgtaactGTCAGTTTTTCAGCTCGGTTCCCCACCATGAAGCCAACCTTGTCCTAACAGGAGGGAGATTACACACCTCGTCTGGAGTTTCAGCCAGTACTTCAAGTGGAAAGTTTTACCAATTGAGCCACTATGTTTTTTGGCGTGAATAATCTTtcggttttcattaaaaaaaaaaaaagtatattaaattCAAGTAATATCagcaatgttattatttatgacTTGATCTCTAACTTGTGAAAATGACTTTGTGCTGaggactgaaaaagaaaatgttactgAACTGAGgccaaaatactttttttgtgttaGGATGTCAGTTACAAATAGTTGACCGAATTGGCAGACAAATCTCATTTTTGTGATGGAACTGTACCGCCATCAGGTGGCTAAGTGTATGAATTGATTCATTCAGATCAAAGAAACCATTTTAGATGGTTaacataatttaacataattaaaacaccTTTTTGGTAAACACACATTCCAGGTATTGAAGCCTTAaggtttatttgaaaatatttgagaTTTGACATGGTCCTTAGCAGAGGTTTTTGTTTAGCCTTCACTTTTGCAACTTTTGCCCCAGTTCCTCATAGTAAATTGTCTCATTATTCTGTGCTTCATTTAAATGACTGTTTGTCTGCAGAGATTTGTATTTTGGATTAAATTAGTAGCATTGCAATACAAGTTAATCCAGTATCCCTTGTTTGAAGAGTGCAGTACGAATGAGCTGCGGCTGCCAAGTCATGGTTCGTTATTGCACTAGTTTAAATCACTCCCCTACAAGACTTGCCTCCCAGAGCTTGAGCTTTCAAATCTTAACAGATCAGAATGGAACTAAAGCTAATCTTTTCCTAAGAAGCCCACTGTTGTATAGATGATGTTTTGGGATTCGATTGTATTGAGCTGAACAGGTATGGAGATTATTATTAAGTGACTTATTGCAGTGTCTGTGTCCTTCACACCTCATTGCTGCCTGCTCTCAGACACAGGAACCCCAAGGAGAATGTATTTAGTTCTGCTAAAGGTTTTGATATTTTGACAGCATTTCTTCGTGCATTAATGATGTTCTAAACTCCATGATTCAATGACTGGGCTTTTAATTAACCCAATATTTAGCACACAGGATCCAAGGATGAATGAAGATTTGCATTGGTCGCTCATCACTACCGAAGGGGGCTCGCTGTGCCTCCACTCAGAACGGTTCAGGGAAAGATCCCTTTTGTTTGACGTCATAAACGGAAAACTTGAACCGTTATTCTGTTCATCTGCAGATGTTTAAGCGAAAGGGACAGCGGGAAACCACATGTTAAGCTACattgttatttacattatttatcttttcagatttctgtatttttgttttgttacaccACTTGCAgagatattattattgttcacaTTTGTCTTGGCGTCTTCTGCCACGTTTAAAGGTGCAGCAATGGTCCGAGCTGTCAGTCACACTGACCTCAGCTGCTCCACCATTGAAAGGAAAAGAATCTGCTGTatattatgaatacattcaCAGAGTATCAACACAATATTAATCTGTTGGTAGCACGTATTATCCCACAGCCTATACTTGAATAAAAGTATTTAGggacaaaacaataataataataataattaataaaaacactgtaaatgttTACACTGAATTGCTGTTGCACTGGTTTAGGCCTGAAAAGTCTTCAGTCAGGACATCTTGTGGTGCATAAATACTGCCTGGTTTTAACTTCCTGTCATTCAGTTGAAAACATGTTGAAAGCTCAAAGTATTTAATTGGTATGATATGAACATTTTACTCTTAACCAATATGCTAAGCCTAAATTTaggttgtatttttttgtttgttttgtacttccttttttgtaatttcatttttggtAAGTTTTGCTAAATGTTTGTGAAACTTTATGGGacttcagttttctttctgtgaaAATACATTCTGTACATGAGTCACA

Function

GO: NA

KEGG:

id description
K08633 ADAMTS19; a disintegrin and metalloproteinase with thrombospondin motifs 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101769 lncRNA upstream 113634 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 165606 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 176751 35039257 ~ 35039467 (+) True G81582
TU101764 lncRNA upstream 199086 35016909 ~ 35017132 (+) True G81581
TU101763 lncRNA upstream 199884 35016075 ~ 35016334 (+) True G81580
TU101845 lncRNA downstream 230643 35480800 ~ 35526188 (+) True AMCG00010563
TU101882 lncRNA downstream 412006 35662163 ~ 35666680 (+) True G81675
TU101918 lncRNA downstream 452532 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 454042 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 457360 35707517 ~ 35713953 (+) True G81710
AMCG00010555 mRNA upstream 22709 35189383 ~ 35193509 (+) True AMCG00010555
AMCG00010557 mRNA upstream 32335 35182931 ~ 35183883 (+) True AMCG00010557
AMCG00010551 mRNA upstream 66586 35142566 ~ 35149632 (+) True AMCG00010551
AMCG00010552 mRNA upstream 77088 35121614 ~ 35139130 (+) True AMCG00010552
AMCG00010553 mRNA upstream 109163 35100115 ~ 35107055 (+) True AMCG00010553
AMCG00010559 mRNA downstream 679 35250836 ~ 35257291 (+) True AMCG00010559
AMCG00010558 mRNA downstream 11810 35261967 ~ 35265386 (+) True AMCG00010558
AMCG00010560 mRNA downstream 113553 35363710 ~ 35365281 (+) True AMCG00010560
AMCG00010562 mRNA downstream 224497 35474654 ~ 35477590 (+) False AMCG00010562
AMCG00010563 mRNA downstream 262843 35513000 ~ 35526224 (+) False AMCG00010563
TU101759 other upstream 203525 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 508824 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1280802 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5712767 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 7309389 27906497 ~ 27906829 (+) True G80326
TU101832 other downstream 220178 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 826956 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 841382 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1980271 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1985609 37235766 ~ 37251169 (+) False G81971

Expression Profile