RNA id: TU101832


Basic Information

Item Value
RNA id TU101832
length 2183
RNA type TUCP
GC content 0.38
exon number 6
gene id AMCG00010562
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35470335 ~ 35477590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttgCTTCACGCAGAATAGTGGTTGAAAGGTCTTTATTTGTCGTAGTTTCTTCCAGTGAAAAGTCACAAATGATTAACACAGCTggcattaaacattaacaaaagaatttactgtttttttttttcctccttctggGAAGTTTTTCAGCCAGGTTAACCAGGAGGCCAACCCAGCTGACGGCCTCCAACAACATGGATGTGAATGTGGTACACAGTCTGCCCCCCGTCGGGCCCCTCATTCACAACCAGCCGGTAGCCATTGGGAAGGCCCACATCTGCCGCGCACTTCTTTGCCACGATCATCAGGTGTCCAAGAAGCTGGAAACACAGAGGAAGAGGCGGGGAAAGCAGTGGCGTGAATTACCTGCAGAAAATTCAACATGGAATCGCGCATGAAGGTTCTGCGGCTGTTCAAGACACTGCACAGGGCAAGACTGGATGTCTTCAAAGACGACACCAGCACCTTAGCAGCTGCCAGACAAAAGATAAACGAAGAATTCAAGAAGAACAGAAATGAGACTTCTGTGGAAAACATCAATCAGatgaTTAAAATGGGTTCAGATGTGGAAACCATACTTCGCAAAACTGTAATCCAGGGAGTTCATACGGCAGACAACAGGATAACTCTTCGTGCCAGAGAGGAGCTCCTGTTGGACAATGTACCTTATTGTGATAACCCCAGGAAGAAGGAGGCATAAATCCAAACTTTGTGTTTTAAGACACTTTATGATGGTTTCCATATTCAAGTGGCATCAaccttcattttctgtttttaaacagtCCGTTATGATATTGACtggtcagcatggtgatgttgCTCTCCATCGCTGAAGAGAAGGAGTGAACGCTGTCCCTGTGGACCGAACAAGGAGCTCCTTTCTTTGGATATAAATGATTGAGGCACCGTGCATATTCATTATGACATGTATATAAGTGAATATCCTGtgtaaaatgtactatttaTCCATtcagatggtgtttttttttaaatctaagtaAATGTCTCTCCTaatgatgtatttataaatgtcttattaatgaaaacattgatgTGTTTCCATTAGTCCTGCATATACAgcttactgtatatattcataaacatcatatacatacattcaaattatatattttttggttctCTAAGTTCACAAAGCTAGATGGTCTTCTGAACATATTGTAAAACCCACTGGATCCATCTGATGGATACATTTTGAAGATCAGTATATTTCTAACGCTGGATGAACGCTAGATGGCAGTGTTGACAAGGATGTCAAAATAACATAAATGGCAATATGGAAGGAGATCATATGTATGCAACACCACACTAAGTTCAAGTTGTAAAATGTAGCAGTATCTGTGGGCTGAGTGTTATAATTTTCGAAGGCTGTTATTAATACTGCACCACAGGCACAAGGTTGATGGGCCGAAATGAATGCTGCTCCACTGTATTGGACTGATCAGTTTAATTTGACAGAGCTCTATAAATTGAATGTCAAGATTTTGGCCacaagtcatttaaaaatgtgaaaagggttgttttgttttaaaacatggcactgtttgtttttgtagtgtaTAACTATGTGCAATCTTTTAACTTACAGTTAAAAGATTGGTCATagttataaaatataacaacttactttaaataaatgatgtgatgcagatttgaatgtttaaCTTTATAACAATCCCTCTCCCAAGGGACTCCTTGTCTTCAATAGTGCATAGTTGTGGGATTTTGGAAACATGTTTTAACGGTGTGAAAGCTTGTCTAAGTCAATGAGCTCTGTGAAAAAGaattttgttaaagaaaatcTTAACAGGCTTTATAAAGATGTAAGAGTCAGCACCATATGCATTCAATTAACTGCAGCAACTGATTATCTCCCTTCAGTTCCTTTAATATAGTTTCTGTAGATATCTAGTTTGAGTCATCTTCCAGACATGCTGTTTTGATCCGTTGCCACGTACTGCAGGGTTACTGTCAAAGCCTCTAATCTTCATTGTTGGTGTGTCTCTGATGcaattactgtataataaaaaaataagtcaaaaatatacattaaaaaatgactgatacatatatttttgaaatgtttataatcagaaaaaatatataatttgggtTGTTTCAGTACAATGCaaacatgtcattaacaaaCTAAATGTTACAAACTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101769 lncRNA upstream 367751 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 419723 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 430868 35039257 ~ 35039467 (+) True G81582
TU101764 lncRNA upstream 453203 35016909 ~ 35017132 (+) True G81581
TU101763 lncRNA upstream 454001 35016075 ~ 35016334 (+) True G81580
TU101845 lncRNA downstream 3216 35480800 ~ 35526188 (+) True AMCG00010563
TU101882 lncRNA downstream 184579 35662163 ~ 35666680 (+) True G81675
TU101918 lncRNA downstream 225105 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 226615 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 229933 35707517 ~ 35713953 (+) True G81710
AMCG00010560 mRNA upstream 105054 35363710 ~ 35365281 (+) True AMCG00010560
AMCG00010558 mRNA upstream 204949 35261967 ~ 35265386 (+) True AMCG00010558
AMCG00010559 mRNA upstream 213044 35250836 ~ 35257291 (+) True AMCG00010559
AMCG00010556 mRNA upstream 220178 35216218 ~ 35250157 (+) True AMCG00010556
AMCG00010555 mRNA upstream 276826 35189383 ~ 35193509 (+) True AMCG00010555
AMCG00010563 mRNA downstream 35416 35513000 ~ 35526224 (+) False AMCG00010563
AMCG00010564 mRNA downstream 66465 35544049 ~ 35554999 (+) True AMCG00010564
AMCG00010566 mRNA downstream 126554 35604138 ~ 35612541 (+) True AMCG00010566
AMCG00010570 mRNA downstream 223077 35700661 ~ 35701496 (+) True AMCG00010570
AMCG00010569 mRNA downstream 241651 35719235 ~ 35731357 (+) True AMCG00010569
TU101759 other upstream 457642 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 762941 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1534919 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5966884 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 7563506 27906497 ~ 27906829 (+) True G80326
TU102021 other downstream 599529 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 613955 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1752844 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1758182 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1783740 37261324 ~ 37264049 (+) True G81987

Expression Profile