RNA id: AMCG00010563


Basic Information

Item Value
RNA id AMCG00010563
length 2843
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00010563
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35480800 ~ 35526224 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgattaGGTGCTGGCTGGATCAAAAACTTGGACTGCTGCAGATCCCCATGGACAGGAATGAGAAGCGACGAAGGCGGATCGATCGGAGTATGATTGGAGAGCCAACAAACTTCGTCCACACGGCCCACGTAGGGTCAGGGGACCTGTTCAGTGGCATGAACTCAGTGAACTCAATTCAGAACCAAATGCAGTCTAAGGGAGGATACGGAGGAGGTGCCATACCAGTAAACGTGCAAATGCAGCTTGTGGACACAAAAGCAGGATAACttctatatacatttgtttgGTTCCTATGAGTATGTGTTTCCTCCTCCTCGCCTCCCTTATTGCCTTTGTTGACTGCTTTTCGTGTTTCTCATGAGACGGAAGTGAGGGTTCGTCCTTCAACATTCATCCCTGTGACTGTTGTTCTACGCAAAAAGATAAAGACAGTTTGGCATTCTGTTGCAATGAAGCTGCCATGCCTTTCAGAAGCTCCCACGGGGGCTCGGCCAAAGAGACATGGACTGATTGCTTCCctctccacccccaccccccctaaACCTAAATGGGATGTTAGcatgatggattttttttttttctgcaagtgCCAGTGCAACATGTAACATTGCTCTTCTGTGTAATTTGCTGTGAGCGGTCGTGctcattttttggtttgtttattttccgttctgttttcggttttgtttatttttggagtTGTAAATGTCAATGTTTGAAGGTCTGGAACCTACAAGcacaaaaccttttttaataCGATTTTATTAAGTTTTGTTCCTTCTTTGCTGTCCTGTTTGGCTGTCAGCGTCGTAGTATACTGAGTGTTTGTGAAGTGGCTTTGTACGGTGGCCTTTCAGTGCCAAAACGCACGTAGCTGCAGAATGATACTGTTgctgacaagaaaataaaatctggcaAAAGTTAATACCATTCCATAGGAAACAGAATTGTTACTTAGCTGCTTAAAATTGGTTTTatgctctttttttattttttattataatttctaaaCTGGCATTTCAAATGGCAATATGCTGTAAATGTGCAGTATACTTGAGTTAAAGAAGCCGGAGTTTCAGTGTGTAACCCGTGTAGTTACATGTGTATAATGTAGTGATGTTGTAGTGATCAGTGCTGGTGTGGCAACAATATTTATATCAAATTGATTATCTGACTGAGATGCAAATCTAAACTTAGTCTTATGGAGTAACAGCCTAGTCTGTTGCCTGCATTTAGTAActttacactttttttgtaaaaaaagagagagagagaatacttTTCACAGCAAATGTTAGCTTTTGTGTACTAAATATTTTGGGGCCATGCAGGTTGCCATGGGCAACTCTTCAAGCTGTCTGAACAAATGCCAGTAAATGTACCATCAATAAACAGGGTGACTCTTACTGTTTTGCTTAAGGATATTTTGCTCAGGTTAAAAGGCGTATTTTCACTTCTATAAAACTTGTGtacattgtataataatattgcaCTGTTTTCTAATGTTAGTGTAAagtaaatgtgtacatttagagaaaaatatatattaacaaataaaacctgTATAAATAGGTTGTTTATTGGTTAGATAGAATCATTTTATGAAAGTCCTTTTAACAAGCTCTGAAGAAATTGTAAATCTACGATAATTGGAATCTTGCTTCGTCAGTTGGGGTACTGGATACATTGTTTCTGAGAATGAAATATCGGCTTAAAAACTGTGCATTGTTTGGCAGTCTGAGGAAGTGGGTTTAGCTTTGCctaaattgcatttgaaacccAGACTGCTTCCTATTAATCTCCTCGTAGTTTATCTGGAATggtcttttcttttcagatctAAAATGAAAACCGTTATTTGGGATTTGCTCAGATCACTTGATGCTAGCTTTCTTTTTCTATTCCGTTCCCGTTATTTCTTTTGTGCTTGTTTCTCTGCGGACTACAGCTGCAGCTTTGTTGAGAAGCCTCTCCTGTTACATGCAAGAGAAAAGTGCAAGACCAAAAGTAGCGCAGTCTGAGAAGACGCTCTGTACAGGACACTACACGTCTGTGCCAGACCTCGGTACCCCCTTCGCCATGTGATCGTGTCTTCACTCTCAAAGTGCTTTATGTTTGTAAATAGTCTTTTCATTTGTATGCCACATCGtttgatagtttaatttatttgttttgttagttacTGGCTGTTTTCACACTGATCAATTGGAAACTTTCCCCACTTAACTCGAAAGAAGGTAGTACCTTGCATTAGCTCATGTCTgtggtatttattatttactaatattaaatattagaaCAACATTAAGGTTACATATACAGTTCTCGATACGATTTTATGTTTCTGTGGAAGAAGGGATGCAAAAGCCCTTGAGTGATCCACTTGAATAAAGTACATAAGTACCCATCATGTATCGTTTGAGTTCTGTCTTTAAAACCAGTGAAAGTAATTGGAAGCACAAGCGGAAAGATACTCACAACCGCGGTTGTAAACGGCCCGTGGTGCGATCAAGTGTGTAAACATCGGTAGGCGCTGGTTGAGGTGCTATGAAATTTATAGTTATACAATTCTCCTTTCTGCCATATCTAGCTACTAGAGAATTTCTCACTTTATGACATCAGGGAATTCATTCAGATTGATAGAAAGACAAaagaatatatcatttttaaattattatttttgtgatgaTTCATATTCCAGTTTTGTACACTTTTTCATCGTTCAGTAAGTTCACATCAAATGTTGGCCTGTAGTTTTTCCAAATGTCTTtggtttaaataaagtttttcttttgtttttcatgtgatCAGATTTTTGTATCATGCTTTTATCGAGtgtcta

Function

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101769 lncRNA upstream 410416 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 462388 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 473533 35039257 ~ 35039467 (+) True G81582
TU101764 lncRNA upstream 495868 35016909 ~ 35017132 (+) True G81581
TU101763 lncRNA upstream 496666 35016075 ~ 35016334 (+) True G81580
TU101882 lncRNA downstream 135939 35662163 ~ 35666680 (+) True G81675
TU101918 lncRNA downstream 176465 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 177975 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 181293 35707517 ~ 35713953 (+) True G81710
TU102059 lncRNA downstream 618614 36144838 ~ 36145081 (+) True G81812
AMCG00010562 mRNA upstream 35410 35474654 ~ 35477590 (+) False AMCG00010562
AMCG00010560 mRNA upstream 147719 35363710 ~ 35365281 (+) True AMCG00010560
AMCG00010558 mRNA upstream 247614 35261967 ~ 35265386 (+) True AMCG00010558
AMCG00010559 mRNA upstream 255709 35250836 ~ 35257291 (+) True AMCG00010559
AMCG00010556 mRNA upstream 262843 35216218 ~ 35250157 (+) True AMCG00010556
AMCG00010564 mRNA downstream 17825 35544049 ~ 35554999 (+) True AMCG00010564
AMCG00010566 mRNA downstream 77914 35604138 ~ 35612541 (+) True AMCG00010566
AMCG00010570 mRNA downstream 174437 35700661 ~ 35701496 (+) True AMCG00010570
AMCG00010569 mRNA downstream 193011 35719235 ~ 35731357 (+) True AMCG00010569
AMCG00010568 mRNA downstream 220313 35746537 ~ 35751114 (+) True AMCG00010568
TU101832 other upstream 35416 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 500307 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 805606 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1577584 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 6009549 29494617 ~ 29503451 (+) False AMCG00010431
TU102021 other downstream 550889 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 565315 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1704204 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1709542 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1735100 37261324 ~ 37264049 (+) True G81987

Expression Profile