RNA id: AMCG00010564


Basic Information

Item Value
RNA id AMCG00010564
length 2547
RNA type mRNA
GC content 0.41
exon number 14
gene id AMCG00010564
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35544049 ~ 35554999 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGAGTGTGTCGGGCTCGATGACGTTTCTGGTCACATGGTTGAAGTATCAAGATGGCGTCAGGACAACAGTGGGTGTTAGTGGAGATGGTGCAGGCTTTCTACGAGGAGAAAGAGGAGCTGATTGAAGAATGGCAGCCGGAGCCCTTAGTGCCCCCTGTGTCGAAGGACCACCCTTCTCTGAATTATAACATTGTTTCAGGACCTCCAAGCCACAAGATCACAGTGAACGGGAAGGAATGCATTAACTTTGCCTCGTTTAATTTCCTGGGCCTGCTTGATAATGAGCGCGTTAAGAACAAAGCTTTAGCATCCCTCACTAAGTATGGAGTTGGTACTTGTGGACCCAGAGGATTTTATGGCACGTTTGATGTCCACTTGGAGTTAGAAGACCGTTTGGCGAAGTTCATGAGAACAGAGGAGGCTATAATTTATTCCTATGGATTTGCAACCATCGCCAGCGCCATCCCTGCGTACTCGAAGAGGGgagatattgtgtttgtgGATGAGGCAGCTTGTTTTTCAATTCAGAAGGGGTTGCAAGCCTCCCGCAGTTTCCTTAAATACTTCAAACACAACGATATGGAGGACTTGGAGCGACTTTTGAAAGAGCAAGAGATTGAGGATCAAAAGAATCCCCGTAAAGCACGCGTGACCCGGAGGTTCATCGTGGTGGAGGGGCTTTACATGAACACCGGAGACGTCTGCCCTCTCCCAGACTTGGTGAGACTGAAGTACAAGTACAAAGTGCGCATTTTCCTGGAGGAGAGCCTGTCTTTCGGAGTTCTGGGAGAACATGGCCGAGGTGTGACTGAACATTTTGGAGTGAATATTGATGATATCGATCTCATCAGCGCCAACATGGAGAACGCCGTGGCTTCGATCGGTGGCTTCTGCTGTGGGAGATCTTTTGTTATTGATCACCAGCGTCTCTCTGGGCAGGGTTATTGCTTTTCAGCCTCGTTGCCACCCATGCTAGCGGCAGCTGCGATGGAGGCCCTGAACATTATGGAAGAAGATCCAGACATTTTCGTTGTGTTGAGGAACAAATGCAAGCACATGCACAAAGCACTACAAGGAATTTCCGGTCTGAAGGTAGTTGGGGAATCTTTCTCGCCAGCTTTTCATTTACAACTGGAGAAGAGTTCTGGATCGAGGGAGGCTGATGTCAAATTATTGCGGGCGATTGTAGATTATTGTATGGACCGGAAGATTGCTCTGACCCAGGCTCGCTACTTGGACAAGGAAGAGAGGTTTCTTCCCCCACCTACCGTTCGGGTGGTAGTTACCGTGGAACAGACTGAAGACGAACTGGAATTGGCAGCATCTTTGATCAAAGAAGCGGCTCAAACCATCCTTAAGTGATCTGCGTTGAGACCTGAGCAGCCACGACGAAGGGGTTTCACTGATTGGTGACATCAGTCTTAAAGGGGTTGGGTGGAGAGTGTGTGTGGCAGGTCCGTTGCTATCAAAAACGTTTCCAAAAACTCAAAAAGTAAGCCTAGATGCCTACAAGCATTTATCTCTATAAAATCATGCACATCCAGTTTATTTAACGTTCCTTCAAATAATATGATTGTACCATTGGATCTAGTTATGTTTTAGCGATGGTATGCAAAGACATTtctgaaactaaataaatgtgacaaGCGAGCTTCACACTTTGTGATTCCACTTTTCATCCTTCCATGGTTTATGATGTTCAGATACTAAAGGTGGAGgggatatattttttgtgttttaatatacatttgaaaccTATCATTGgaggagtatttttttttttatgtagaaatgcttttataaatattttctcaGATACAACTTTCTTCACTacgttatttttttcatattaactGAAACCAAATGGCTTATGTATGTATAAACTCTTATACATGTATAAACTTCCTCTCGTTTTTTCAGTAGCATCCTCGGCTTTTTAAACCGCACAATAGTTACTATACAGTTACTACACAGGGCAGAATATTTTCTACACAAAGGCTAGTTGCAGAGAATACTAAGTGACAgtacaaaatctttttttttcttccaaaagcATACATGTCAGCTAGCAGTTTAACTGTATCTGACGGTCTGTGAATTATTGGTCTTTCTGACTgtttactgtagtttttttgttaatctGCACAAATGCAATGTTTCTCATGCCAGAACCGTCCAAACTTTAGTCACCAAGAGGATGTCTATGTAACTATCAATGTTGTTGCATTTCCAACTGATATCACTATTATTTTGCAGAGATGCatattgtcattttcatgatCTAGTCtagtataacaaataaaatgtcagtcatttatatttttatcaaCATCTGTGGCAAATTACATTATTCACTGGCATTTGTAAAATAGCCTGTAGTccaatgtataaaaaataatgtggactttttgtataaaattatatgaactgtattcatttttacaaaCTATTAGATATGCAGTTTATAATGAATGTGCCTTTTTGTTGCTGCTAACAGTACTATGGGTTGGAGAgaatatgattaaaataaatccaaacaaaGTAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101845 lncRNA upstream 17861 35480800 ~ 35526188 (+) True AMCG00010563
TU101769 lncRNA upstream 441465 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 493437 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 504582 35039257 ~ 35039467 (+) True G81582
TU101764 lncRNA upstream 526917 35016909 ~ 35017132 (+) True G81581
TU101882 lncRNA downstream 107164 35662163 ~ 35666680 (+) True G81675
TU101918 lncRNA downstream 147690 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 149200 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 152518 35707517 ~ 35713953 (+) True G81710
TU102059 lncRNA downstream 589839 36144838 ~ 36145081 (+) True G81812
AMCG00010563 mRNA upstream 17825 35513000 ~ 35526224 (+) False AMCG00010563
AMCG00010562 mRNA upstream 66459 35474654 ~ 35477590 (+) False AMCG00010562
AMCG00010560 mRNA upstream 178768 35363710 ~ 35365281 (+) True AMCG00010560
AMCG00010558 mRNA upstream 278663 35261967 ~ 35265386 (+) True AMCG00010558
AMCG00010559 mRNA upstream 286758 35250836 ~ 35257291 (+) True AMCG00010559
AMCG00010566 mRNA downstream 49139 35604138 ~ 35612541 (+) True AMCG00010566
AMCG00010570 mRNA downstream 145662 35700661 ~ 35701496 (+) True AMCG00010570
AMCG00010569 mRNA downstream 164236 35719235 ~ 35731357 (+) True AMCG00010569
AMCG00010568 mRNA downstream 191538 35746537 ~ 35751114 (+) True AMCG00010568
AMCG00010572 mRNA downstream 248225 35803224 ~ 35808390 (+) True AMCG00010572
TU101832 other upstream 66465 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 531356 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 836655 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1608633 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 6040598 29494617 ~ 29503451 (+) False AMCG00010431
TU102021 other downstream 522114 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 536540 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1675429 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1680767 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1706325 37261324 ~ 37264049 (+) True G81987

Expression Profile