RNA id: AMCG00010570



Basic Information


Item Value
RNA id AMCG00010570
length 720
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00010570
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35700661 ~ 35701496 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACGGAGACTTAAACGCCACTGCAACCAGAATGGGGTTTGGGGTTAATACTGAAATGGCCCACACTGTCATCCATTCCGACTCACAAAAGGACCCCGATAGCGCTGCTCTTAGTGACGTCACGTCTCCCCCGGCTCCTGCACCAGGAAGTGCCCGAAGCCCTTACAGCGTGTTCGCCAGGTCCTTCCTGGGGCTGAAGTCGCACCCGAGTAACAGAGAGAGCCCGGGCGCCCGGAGGAAGAGGGAGTTCATCCCGGAGGAGCAGAAGGACTCCAGCTACTGGGTcaagaggaggaggaacaaCGAGGCGGCGCGCAGGTCCAGGCAGCGGCGCAGGGTGGAGGAGTTCCTGCTGGAGAGCCGCGCCGTGGAGCTCCTCCGGGAGAACGAGAAGCTGAAAGCGGCGCTGTCGGCCGTGCGATACAGCTTCAGAGATCGGGGGGACCCGGTGGAGATCCCCGAGGCAAGTTTTGAGCCTCCAAGCTTGTCCAAGCATTTTGTCCATCACGCCGCCACAGAGCCTGCCCATCACCAGGTGCTCGGAGTGCAGCCACCTGCTCTGGCGCCTTTACGCACAAACGTAGTCGTTTCCCAAGCCTTATTTCAGGACGGGTTCCAGCGTTCGCGCACCAGCTCTGCATGGTGGTTTCCTGCTGCAGCAGCCCAGGCATCCCAGTGTGAGAGACTCGATGCTTGCTGCCAGCGCCAGAGGGTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101882 lncRNA upstream 33981 35662163 ~ 35666680 (+) True G81675
TU101845 lncRNA upstream 174473 35480800 ~ 35526188 (+) True AMCG00010563
TU101769 lncRNA upstream 598077 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 650049 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 661194 35039257 ~ 35039467 (+) True G81582
TU101918 lncRNA downstream 1193 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 2703 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 6021 35707517 ~ 35713953 (+) True G81710
TU102059 lncRNA downstream 443342 36144838 ~ 36145081 (+) True G81812
TU102061 lncRNA downstream 446047 36147543 ~ 36148008 (+) True G81814
AMCG00010566 mRNA upstream 88120 35604138 ~ 35612541 (+) True AMCG00010566
AMCG00010564 mRNA upstream 145662 35544049 ~ 35554999 (+) True AMCG00010564
AMCG00010563 mRNA upstream 174437 35513000 ~ 35526224 (+) False AMCG00010563
AMCG00010562 mRNA upstream 223071 35474654 ~ 35477590 (+) False AMCG00010562
AMCG00010560 mRNA upstream 335380 35363710 ~ 35365281 (+) True AMCG00010560
AMCG00010569 mRNA downstream 17739 35719235 ~ 35731357 (+) True AMCG00010569
AMCG00010568 mRNA downstream 45041 35746537 ~ 35751114 (+) True AMCG00010568
AMCG00010572 mRNA downstream 101728 35803224 ~ 35808390 (+) True AMCG00010572
AMCG00010574 mRNA downstream 241351 35942847 ~ 35944273 (+) True AMCG00010574
AMCG00010579 mRNA downstream 284426 35985922 ~ 35988965 (+) True AMCG00010579
TU101832 other upstream 223077 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 687968 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 993267 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1765245 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 6197210 29494617 ~ 29503451 (+) False AMCG00010431
TU102021 other downstream 375617 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 390043 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1528932 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1534270 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1559828 37261324 ~ 37264049 (+) True G81987

Expression Profile