RNA id: TU102021



Basic Information


Item Value
RNA id TU102021
length 1262
RNA type TUCP
GC content 0.44
exon number 6
gene id AMCG00010578
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 36077113 ~ 36079892 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaatacttatttccctcattaacacgcaaatcaatgtataactgttttgaaatgcgtttttctggatttgtgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcggcaggggatcaaatacttttttccctcactgtaggtatCTATTGAGCttataaatactttttgaaTCAGTGAACAATCTAAGAAAGACTGGGGAAGATAccaatgtgtgtttgttcttgtgttttaatattataatattttaataaccacAGAGCATTGCTTGTAAACTACAAAACACTTTCCTCTGTACAGTAACCCTTTCTTGACAAAGTAAACATGATGTTACACCTCAAGATTCATCAGCATttactgcatattttgtttaacaagcATTCCTTCAATCTCACATTCTTAAAATATGAATCCATACTCATTATCTGCTCTTCCATTTGCTTAGTTCACCATTTCCACTTTAATTATTTGCCCTGTTAATTATTGGACAGAAATGGCTTCACAAACCACACGGGTGATGCTGGGGCTTTATGATGGGAGGCGAGGGAAAGCTATTTGCTTGCCAGTGCCATAACCATTTATTCAGCTGTGTTTACAATTTAGCTTTGCCTCTAAAAACATCGCAAGGTGCAAAGTGCAATCGCCGCAGAAACTACAATCCGGAATCGTGCACAACCCACACAGAGAGGGACTTCAAATTATAGCAATACGTCTTGAGCTGGACTTCTGAGTGTTTGCAGttttgttcatGTACGAGAGGCGCTCCAGGATGAGGCAGAGAGGGTCTTTGcctctgtggaggaggagctggggATCAGCATTGACGTGCTCCGTTCCTCCATAACTGTTCTGCTGCTGAATCACGAGAGCGCCAGAAGGCAGAACCCCAGCCAGACCCAGATGGTCACGCTGTTGGAGGAGATTGACGCCCTGTTGTCCAAGCATGCACAGAACCTGAAGCGCACATCTCGGACTTGGAGGAGCCACATGGACTCCTTCATCCTCGGAGAGCTAGCTTGTGCTCCATCTGAAATGAGTGTGGACAGTGTCCAGGAGGAGGCCGATGAAAgtgtggaggaggagaaggaagaggaggccTACGAGAgtgaggaggaagaggaggcctACGAGAgtgtggaggaagaggagGTCTACGAGAgtgtggaggaagaggaggcatACGAGAgtgtggaggaagaggaggcNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101923 lncRNA upstream 363160 35707517 ~ 35713953 (+) True G81710
TU101920 lncRNA upstream 372586 35704199 ~ 35704527 (+) False G81707
TU101918 lncRNA upstream 373315 35702689 ~ 35703798 (+) True G81707
TU101882 lncRNA upstream 410433 35662163 ~ 35666680 (+) True G81675
TU101845 lncRNA upstream 550925 35480800 ~ 35526188 (+) True AMCG00010563
TU102059 lncRNA downstream 64946 36144838 ~ 36145081 (+) True G81812
TU102061 lncRNA downstream 67651 36147543 ~ 36148008 (+) True G81814
TU102146 lncRNA downstream 548009 36627901 ~ 36628706 (+) True G81880
TU102238 lncRNA downstream 1033083 37112975 ~ 37113181 (+) True G81954
TU102270 lncRNA downstream 1172275 37252167 ~ 37253628 (+) True G81983
AMCG00010579 mRNA upstream 88148 35985922 ~ 35988965 (+) True AMCG00010579
AMCG00010574 mRNA upstream 132840 35942847 ~ 35944273 (+) True AMCG00010574
AMCG00010572 mRNA upstream 268723 35803224 ~ 35808390 (+) True AMCG00010572
AMCG00010568 mRNA upstream 325999 35746537 ~ 35751114 (+) True AMCG00010568
AMCG00010569 mRNA upstream 345756 35719235 ~ 35731357 (+) True AMCG00010569
AMCG00010585 mRNA downstream 11675 36091567 ~ 36094497 (+) True AMCG00010585
AMCG00010582 mRNA downstream 15832 36095724 ~ 36097051 (+) True AMCG00010582
AMCG00010583 mRNA downstream 21516 36101408 ~ 36108043 (+) True AMCG00010583
AMCG00010584 mRNA downstream 48937 36128829 ~ 36139434 (+) True AMCG00010584
AMCG00010589 mRNA downstream 176339 36256231 ~ 36256602 (+) True AMCG00010589
TU101832 other upstream 599529 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 1064420 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 1369719 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 2141697 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 6573662 29494617 ~ 29503451 (+) False AMCG00010431
TU102028 other downstream 11647 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1150536 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1155874 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1181432 37261324 ~ 37264049 (+) True G81987
TU102525 other downstream 1806328 37886220 ~ 37888163 (+) True G82192

Expression Profile