RNA id: TU102028



Basic Information


Item Value
RNA id TU102028
length 549
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00010585
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 36091539 ~ 36094497 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCGTCAGGAAGGTCAACATGGGAAGCAAAATGGCAGCTGCCAGTAGGGTCGTACAGgcaGTGCGGCCTCACGCTCCTCTGATTAAATTTCCTGATCGGCTGAGCACCCCAAGGCCCAGTGTCCAAGAAGCACTGAAAATGGTGGTTGGCACCCCGGCACAAACTCCTGGGACCCACAGTTTACCACAGTCTGTCAGCGCTGCCTCCAGACCACCGGGGACCAGCAGCGTTGCCCCCCGGAGCCACACGGCCGCCCCCCCGGACACTGCCGCCACTATCGCAGGCCTGCCCCCGCGGTACCGCAGAAGGACAATCGCCACAGAGGAGATGGATTACATCCAGCGCGGGGGACCAGAGTGACCCGAATTCTTCTGTGTTAACCAACCAAAGCCCTTATTTGTGGAAatctcttctgtttgtttttcccgaAAATGTACAcagcaggttttatttttgttgtatgttcTGCGGATTCAAATTAAAAGATGTTCAATTCATGaatggtttccttttttctgacagtaataataaattatatttaaaaatgta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101923 lncRNA upstream 377586 35707517 ~ 35713953 (+) True G81710
TU101920 lncRNA upstream 387012 35704199 ~ 35704527 (+) False G81707
TU101918 lncRNA upstream 387741 35702689 ~ 35703798 (+) True G81707
TU101882 lncRNA upstream 424859 35662163 ~ 35666680 (+) True G81675
TU101845 lncRNA upstream 565351 35480800 ~ 35526188 (+) True AMCG00010563
TU102059 lncRNA downstream 50462 36144838 ~ 36145081 (+) True G81812
TU102061 lncRNA downstream 53167 36147543 ~ 36148008 (+) True G81814
TU102146 lncRNA downstream 533525 36627901 ~ 36628706 (+) True G81880
TU102238 lncRNA downstream 1018599 37112975 ~ 37113181 (+) True G81954
TU102270 lncRNA downstream 1157791 37252167 ~ 37253628 (+) True G81983
AMCG00010578 mRNA upstream 11652 36078019 ~ 36079887 (+) False AMCG00010578
AMCG00010579 mRNA upstream 102574 35985922 ~ 35988965 (+) True AMCG00010579
AMCG00010574 mRNA upstream 147266 35942847 ~ 35944273 (+) True AMCG00010574
AMCG00010572 mRNA upstream 283149 35803224 ~ 35808390 (+) True AMCG00010572
AMCG00010568 mRNA upstream 340425 35746537 ~ 35751114 (+) True AMCG00010568
AMCG00010582 mRNA downstream 1348 36095724 ~ 36097051 (+) True AMCG00010582
AMCG00010583 mRNA downstream 7032 36101408 ~ 36108043 (+) True AMCG00010583
AMCG00010584 mRNA downstream 34453 36128829 ~ 36139434 (+) True AMCG00010584
AMCG00010589 mRNA downstream 161855 36256231 ~ 36256602 (+) True AMCG00010589
AMCG00010590 mRNA downstream 180540 36274916 ~ 36292339 (+) True AMCG00010590
TU102021 other upstream 11647 36077113 ~ 36079892 (+) True AMCG00010578
TU101832 other upstream 613955 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 1078846 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 1384145 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 2156123 33903815 ~ 33935416 (+) False AMCG00010529
TU102256 other downstream 1136052 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1141390 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1166948 37261324 ~ 37264049 (+) True G81987
TU102525 other downstream 1791844 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 2074780 38169156 ~ 38169531 (+) True G82236

Expression Profile