RNA id: AMCG00010603


Basic Information

Item Value
RNA id AMCG00010603
length 417
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00010603
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 36843043 ~ 36856935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATGGCAGTGGTACCAAGCAACTGGGTACAAGGGGATGCGTATACACGATGAAGAGATCCAGGATCTGCTAAACCCCTCTTCCGGATTCTTGGAACTCCAGCAGGATTCCAAATGGAAGGTTGATGTGGCAGAGATCACAGCGATCAAACAGTTGCTGAAGAAAGGGACCAGGCAATGGAAACGGGAGGCCGCAGCAGCCAACCCGTCCTCTTCTCGCTCTCATGCTGTGCTGCAGGTTACCGTAAAGCATCAGAGTCGCAGTGCTGTGCCAGAGCTGCGCATCAGCAAGCTGGCCATGATGGGCCTAGCCGGCTCTGAGCGCATAGCACCGatAACCGAGGCCCGAGATGAACGGAAGCAGCCCACATCAACCGCTCCCTGCTGGCCTTGGGTAGCTGCATCAGGGCCCTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102146 lncRNA upstream 214337 36627901 ~ 36628706 (+) True G81880
TU102061 lncRNA upstream 695035 36147543 ~ 36148008 (+) True G81814
TU102059 lncRNA upstream 697962 36144838 ~ 36145081 (+) True G81812
TU101923 lncRNA upstream 1129090 35707517 ~ 35713953 (+) True G81710
TU101920 lncRNA upstream 1138516 35704199 ~ 35704527 (+) False G81707
TU102238 lncRNA downstream 256040 37112975 ~ 37113181 (+) True G81954
TU102270 lncRNA downstream 395232 37252167 ~ 37253628 (+) True G81983
TU102279 lncRNA downstream 409827 37266762 ~ 37267347 (+) True G81990
TU102356 lncRNA downstream 594186 37451121 ~ 37455288 (+) True G82053
TU102364 lncRNA downstream 640807 37497742 ~ 37498116 (+) True G82059
AMCG00010601 mRNA upstream 72496 36741485 ~ 36770547 (+) True AMCG00010601
AMCG00010598 mRNA upstream 166007 36654514 ~ 36677036 (+) True AMCG00010598
AMCG00010591 mRNA upstream 541902 36299973 ~ 36301141 (+) True AMCG00010591
AMCG00010590 mRNA upstream 550704 36274916 ~ 36292339 (+) True AMCG00010590
AMCG00010589 mRNA upstream 586441 36256231 ~ 36256602 (+) True AMCG00010589
AMCG00010604 mRNA downstream 18791 36875726 ~ 36896641 (+) True AMCG00010604
AMCG00010605 mRNA downstream 47447 36904382 ~ 36915990 (+) True AMCG00010605
AMCG00010608 mRNA downstream 147450 37004385 ~ 37009695 (+) True AMCG00010608
AMCG00010609 mRNA downstream 162441 37019376 ~ 37030069 (+) True AMCG00010609
AMCG00010611 mRNA downstream 337820 37194755 ~ 37197378 (+) True AMCG00010611
TU102028 other upstream 748667 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 763151 36077113 ~ 36079892 (+) True AMCG00010578
TU101832 other upstream 1365459 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 1830350 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 2135649 34701438 ~ 34707394 (+) True G81496
TU102256 other downstream 373493 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 378831 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 404389 37261324 ~ 37264049 (+) True G81987
TU102525 other downstream 1029285 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 1312221 38169156 ~ 38169531 (+) True G82236