RNA id: AMCG00010620


Basic Information

Item Value
RNA id AMCG00010620
length 2079
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00010620
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37394062 ~ 37400799 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACATACATGCAGACTGACGTCATCTGTAATAAGCATGCTAATTATGAGATAATTATGTCTACATTCCTAACGGACAGGGCTGCGGTGACTGCCGGGGTTGGGGAGTTAATGTCTGTTTAATGTAAAGACTTGCAGCTCTGCAGGGGAGGCGGGTATTAGTGTTAGAAAGTCATGGTAAATCCTTAGTAATAGATAGTATGAGGCGACGTCAAGTTCCGCAAACCTGCACCGCCATACACACGCATCTTCTGTAAGTCGCTATTTTGTATCCATGTCATTGTCTCTGCGGCGCGTAGACCCGGGCTGGCGGGGGCAGCAGTGAACATGGCCCCCCCTGCACTCGGCTCCCAGAAGGACCGGCACAACACGACCCCGCACAGGCCGCCCACCCGGGTCCTAAGGGACAGGGGACCCTGTCTCCACAGAGAGGGGTCCAAGGAGAACATTGAGACCCCGGGGAAGGAGACCGGATGCGCCCCCCGACCGCTCTGCGTGACCCCCTTAATATCAAGGACACAAGCGAGCCTGGTATCCAATGTGGAGTCCAGCAGACGTTTAGCTGACAAGTCTGTAAGCCCCAACCTTGCCATGCTGAGAATGACTCCAGGCCCAAGCCTGCAGGAAAAGCAACAGGTCCTTCAGCAGAAACACCAGAAGGCCAAGGCGTCACTGGATAAACTGGCTGTGGGGGGTGGAGTAAGTCCCTTGCTGATGAGTTTGCACCACTACACAGAAAAAGTAACTGACTTTTCTGAAAAGCATCCAGTCCAGAGCAGCTCCCAGTCCGTCCTCAACGGTACAGTCCTGGCCTGGCACACAGACTTCTGGAAGCTGCTGGATGACGTCCAGAGGAGGTGTGAAACCCACCTCCTGCAGGCACACGCCACCTACCTCCTCTATCTCTTCCTGTATGCCGTGGCCATCGGCACACTGCTGTACTACCTGGCCGATAACGTGATTCAGAAAAGCAGGCTGACGCCACGAAGGGTTAAGACTTGGGTCCTGCTCCTTGTTGCCACAGCATCCTGGACCATCCTGATGCTGCAGTTACTGCTGTCCTCTCAGCACCTGGAGCACGCCATCGAGGCCAGCGTCCACCGTCTCCTGGAAGAGCTGGGTCACCTTGCTACCGTAGACCTCGACCTCAAGACCTACCACAACGTCGCCGCCTACTGGACGGTCCGCTGCCTGCCGCCCACGGCCAAGGGGACGCTCACGGTGTTTGGGCTCGTGCCGGTGCGCGACGTGTTCTTCTACCTGCAGTACTACAGCGTGCCCGTGCTCACGGCCCTGTGCACCCCCGTCCTGAAGCTGCTCCTGGCGCTGAAGGAGATCTATGTCGGGCCCCGGAAGTCTACGGTCCAGTCATGCAACCGGTGATGTCACGCTCTCCCAGCCACACTAAATGACATGATCGGCCCTTTCAGAGAGTCCTGCTCCTCTTTTCACTGCGGACCCCGGGTCTACCACGCTCCTTCATCAGCTTGGCAAGGCTCTGCCCCGCCGGCACTACCACAGCACCGCGTGGCTCGGCTCGGTGTGAAAGCCCAGGTCTCGGGCCCTTTTTGCCGACCTCTTCGCCCTGCGGTGCGCTTGTGCGATCGTGCATTGTGCGATGGTACTCTATGTGTGTCGAGTGTAACATTTGCACCCTttataacactttatatttcCTTGGACGTTTGAATGCCATCGTTTTTAAGTTCAAAGAGTCAAttatcactttattttaaaccGTTCTAATTGCATTATGTATCAAACTACCTATTGCCTTTTCTctgggaaattaaaaatgaactttgTGACAAATACTGTCTACAATGTATTGTAATGATTgtattggaaacatttaaagatacaaTAATTTGATTATAGAGGAAAGAGATAATTTGCCATctcatcagttttttttttccctttgaatTATCTTATGGTGTCTTATCAGTGCTTGTATTTTACACGGGCAGAAAATATAACCAAGTTTGGCAGATATGGATTGACAATTGTACATTATCTTAGAAGTTCAAACACTGCTTGTAACATGACTTACATACTGGTATTGACAGTTACTTATGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102279 lncRNA upstream 126715 37266762 ~ 37267347 (+) True G81990
TU102270 lncRNA upstream 140434 37252167 ~ 37253628 (+) True G81983
TU102238 lncRNA upstream 280881 37112975 ~ 37113181 (+) True G81954
TU102146 lncRNA upstream 765356 36627901 ~ 36628706 (+) True G81880
TU102061 lncRNA upstream 1246054 36147543 ~ 36148008 (+) True G81814
TU102356 lncRNA downstream 50322 37451121 ~ 37455288 (+) True G82053
TU102364 lncRNA downstream 96943 37497742 ~ 37498116 (+) True G82059
TU102360 lncRNA downstream 98318 37499117 ~ 37520738 (+) True G82056
TU102361 lncRNA downstream 98318 37499117 ~ 37501058 (+) False G82056
TU102366 lncRNA downstream 109432 37510231 ~ 37510832 (+) True G82061
AMCG00010621 mRNA upstream 855 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010622 mRNA upstream 27570 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010615 mRNA upstream 32307 37357271 ~ 37361755 (+) True AMCG00010615
AMCG00010612 mRNA upstream 170743 37221441 ~ 37223319 (+) True AMCG00010612
AMCG00010611 mRNA upstream 196684 37194755 ~ 37197378 (+) True AMCG00010611
AMCG00010627 mRNA downstream 74111 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010626 mRNA downstream 81639 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010634 mRNA downstream 367980 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010635 mRNA downstream 394730 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010636 mRNA downstream 464263 37865062 ~ 37873485 (+) True AMCG00010636
TU102276 other upstream 130013 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 142893 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 142893 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1299686 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1314170 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 485421 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 768357 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 846222 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1236704 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 1381280 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile