RNA id: AMCG00010626


Basic Information

Item Value
RNA id AMCG00010626
length 2419
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00010626
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37482438 ~ 37494740 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCTGGCAGCAAACCAGGGAAGTGTGGGGCGAAGAAGGTTCTCCTCACGGACACTGGACATACACTGGTCGACGCGTCTCCCGCCCTGCAGCACAGGGGCTCTTTGTACAAAGATCAGGATTCGTGGTCCGTGGCATTTGAGCACTGCAAAGGAAAATCACAGTCGCCGATTAACATTGACACCAGAAAAGCCTTATTTGACCCGATGCTCCCGGAGATAGTCCTGGAAGGATATGATCTATCAGACACCAAATCTCTGAAGTTACAGAACAATGGCCACACATTGCAGCTGAGTCTGCCCAACACCCTGCGCATCGTCCGGGGCTTCGACACAGTGTTCATCGCTGCGCAGCTTCATTTCCACTGGGGGACCAAGGAGGATCCGGGGTCAGAGCACACCATTGATAATATCCATGTGGTTCACTACAACTCCAAATACGCAAACCTCTCCGAAGCTGCGAGCAAGGCCGACGGGCTGGCAGTGTTGGGGGCTTTCATCGGGATTGGGCTGCACGAAAATGAAAACTACGAGAATATCCTTTCTGTCCTAAAAGATGTCAGTATAGAAGAGACGGACACTGAGATTCCTGGCTTCAATGTTCGCCATCTTCTGCCCCCAAACCTGCAACGTTTCTATCGTTATAACGGGTCCCTCACCACGCCGCCCTGCTTTCAGACTGTGAACTGGACCATCTTCAATGATACCATCAGAGTGTCGAGGAAACAGCTGGCAGCTCTCGAGGACACTTTGAAAGCTGAACATAATGAACTGTTGTCCAAGAACTTCAGAGCCCCACAGCTGCTCTTCGGCAGAGATGTTCAGTCATCTTTCAGGGCAGAAGTGAGCGGCTCAGGCTCCCAGCCGTCCGGAACTGGTCGCTCCGGCGGGAACAGCAGATCTATTGGTGAAGAAAATGGAGACATCCTGGCTATTGCATTTGGAGCCCTTTTCGTTGTCACTTTGATAGCGTTCATAGTTTACATGGTCCACCAACGGAAAAAGTTTTCAAGATTCACGAAGGACTCGAGGCAGAATGTCATCTACAAGCCAGCAACCAAGGAAGAGGCTTAGCCTGAAAAGACGGTGAAGACTCTGCAGTCCTGTGATCCATTGACAGAAAATGTCTCTCAGTTATGGGGGCTGTGTACAGAGTCTGAAAAGtatttgaattgcttttaattaaagacattttgtttctgtaaataataatatgaaaaaaaatgcagctagaaaaaaaacacaccttttggtcttaaaatgaacaataagAAATTCATTGTAGGCAATTATATTGTTCATATTGTCCAGGATTGTCCTCAACTTCAACTGTCATTCAAATGCGAGAGAAGCAGATATCATGAAGGCACTCCAAGAGTTCCAAAACCTTGTTTTTATAAGTatatttattactgttgttgctattgttggtggtgtttttgttgtatAATTGGTTGAATTCACGTGTGAATGGTCTTCTGGTTTGGGCGTATAATTTACCTGGATTAAGTATTTGCAATCCAGTTAACAAGATTGCTTACATCAAAGAACGCACACCAAAGTATTTCTGCTTAGTTGCCTTGCCTTGACGCCAGCAGTTAAAATCACTTTGTTTCCATTTCCAGCAAAATTTGAGTCATGTGTGGTGAGTGGCTTAAAAAAACCTCAGTCTCCAGATCCTTAAATCCTATAGACAATTCTTAATTTGCACTTTTTGGAGAGCTTTCTTTTGCAGATAAATAACCCAAAAGAAACCCCTTTACCTTAgcacacattttattgaatcaGTAGATAGTGTTTATGAAAATTGTCATTCCTGTATTCACTTCAATGAGACACTCCTGTCTTTATTACCCCACACCTACAGTGAAATAAGTGCTGACTGCACTATACTAAGGCCTAGACCTGTACAAAACTTTGACCTTCCAGTGAATCACAAAGTTCAAACCGATCActgattgcttttttattttgaaatagtaGAACGTGGCTGCTGACACTAATTTATACCACCATTGGGTGCTATTCGTGGACAGGTCAAAGCCAGGCCTCACCAGGACCGTGTTCTGTTCATGTGTCACATAATATCGTATTATATGGGTTTTTATAAGCACAAATTGAAGGCTATTTATCTTTATATTGTATAGACctatgtaatgtatgtaatactCTAAAATGTTGTGTTGTGATGCGTATTCTTGTCACCTCTGCACAGTGACAGTGCTAACTTTTCACAATCTGAGCGCCGTGCGAAGCAACTGGAAAAGAACgtttcaataaatgttttgttcaaaTTTGTCTGCcgtttgtatttcaatttcagATGAATATATACTCTTGAGATTGTCATACAACTGCTTGTGTTAAAACCTTTTGTACACAACAAAGCCTTTgactcttttaaattaaaaacagc

Function

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102356 lncRNA upstream 27150 37451121 ~ 37455288 (+) True G82053
TU102279 lncRNA upstream 215091 37266762 ~ 37267347 (+) True G81990
TU102270 lncRNA upstream 228810 37252167 ~ 37253628 (+) True G81983
TU102238 lncRNA upstream 369257 37112975 ~ 37113181 (+) True G81954
TU102146 lncRNA upstream 853732 36627901 ~ 36628706 (+) True G81880
TU102364 lncRNA downstream 3002 37497742 ~ 37498116 (+) True G82059
TU102360 lncRNA downstream 4377 37499117 ~ 37520738 (+) True G82056
TU102361 lncRNA downstream 4377 37499117 ~ 37501058 (+) False G82056
TU102366 lncRNA downstream 15491 37510231 ~ 37510832 (+) True G82061
TU102362 lncRNA downstream 31343 37526083 ~ 37533144 (+) True G82057
AMCG00010627 mRNA upstream 558 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010620 mRNA upstream 81639 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010621 mRNA upstream 89231 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010622 mRNA upstream 115946 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010615 mRNA upstream 120683 37357271 ~ 37361755 (+) True AMCG00010615
AMCG00010634 mRNA downstream 274039 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010635 mRNA downstream 300789 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010636 mRNA downstream 370322 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010641 mRNA downstream 466012 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010644 mRNA downstream 515319 38010059 ~ 38025329 (+) True AMCG00010644
TU102276 other upstream 218389 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 231269 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 231269 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1388062 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1402546 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 391480 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 674416 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 752281 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1142763 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 1287339 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile