RNA id: AMCG00010634


Basic Information

Item Value
RNA id AMCG00010634
length 2055
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00010634
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37768779 ~ 37781102 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGTGACCGGATTCACGCTTCTGTCTCAACCAGGGGACTCAGCTGAGGAAGTTGACCTGAATGTGGTGTACCAGGCAGCTGCTAATGGAGACGTCAACACCCTGACAGCAATAATTCGCGAGGATCCCTCCATTTTGGAATGCTGTGACAGCGAGGGGTCCACGCCTCTGATGCACGCTGTTTCAGGACGCCAGGTGGACACTGTGAAGTTGCTGTTGAAAATGGGGGCCTCCATCAACACTCAAGATGCATGTGGAAggacctccctctctctggcaaCATACCTGggTTGGctggaggggtgtgtgtgccTGCTGCGAAACGGAGCCAAACAGAACATCGCGGACAAAAACGGGCGGCTGCCCCTGCACGCGGCCACGGCGGAAACCGACCTCAGGTTAATGGCGGTACTGTTGCAGCAATCTACACTGTGTGAGATCAATCATCAAGATAACGAGGGCATGACTCCCCTGCACTGGGCGGCGTTCCACAACCGCCCCCAGCACATCCAGGCCTTACTGCAGAAGGGCGCCGACCCCACCCTGGTGGACAAGGACTTCAAGACTGCCCTACACTGGGCTGTGCAGAGCGGGAACCGCTTCCTGTGCTCGCTGATCCTCGACCACCAACTGGGCTCATCCGTGATCAACTATGACGACGAGAACGGGAAGACCTGTGTGCACATCGCCGCGGCTGCGGGCTACAGCGACATCATCTACGAGCTGGCGCGGGTTCCCGAGACCAACCTGCAGGCCCTGGATGTCGACGACAGGTACGCCCGCCGGGTACCGGTGTCCGCACGGTCCCCCCGCTCTGTGCGGCTCGGAATCAGCGGGACTCCTCTGCACTGGGCGGCCGCGGCGGGGAAGGCGGACTGTGTGCAGGCCCTCCTCCAGCTGGGGGTGGAGCATGGGCCCCGGGACATCAACGAGAACACCCCCCTAACATACGCAATGTACTGTGGCCACACGGCATGCATCAAACTGCTCTCCCTGGAGAACAGATCTGACTCTTCAAGACAGTTGCCGTCTCGGAACAACCACCCGTCTCTGAAAAAGGAGGGGAGGTTCAGCGTCCTGAACCAGATCTTTTCCTGCAAGAAAAAGAAGGACGACCAAATGACAGGGCAGAAAGAGAAATGCCAGTACCTGAGGGAGGAGACGTCTGAAGTCGATGACATCATCACCATGTTTGACTGCATCATGGACACCTCTGGGAAAAGCCTCTCAGAGCACCACGGCGGTGGCATGGAAGCCGGGCAGAGGTCGGGCGACCCTCAGAAACCCCACCTCATGGACAAAACCCCACCAAAGGAATACAAGGGACTGCCGCCCATTCGGACACAAAGTCTTCCCCCGCTCACCCTCGGCGGCTCTGCATCGGCCTCGGCCCTGAGCTCGGTGCCCTGCGGCCCCACTGGGCTGATCGCCTACCACTTCGCACACCGGTCCCAGAAGAGCAGGAGCGAACACGACCTGTTCGACAGCAGGACCAAGTGCCAGGCCTTTCTGAGCAACGCGTGGAAGTCGGAGGCCAATCAGGTCCTGTCCCAAAAGGCCTGGACGGCTCCCCCCACGGAGAAGCTGCTGGACGGCTTCCTGCAACAGAGGTCCAGTCAGGTGGATCTTCTCTACCCGGCTCAGCTCCCTTACCTTCACAGGAAGGGCCTCGCACAAAATGTACACCAGCTTCCCCTGGACAGGTTGAGGATGAGAGAGACGGCTCTGGCGCGGAACAGCTTGGCTCCCATACGCGATCACTGCACCCACAGGTTCACCCTACCGCCCAACCAGGTCTCTCAGGGGGTGAAGAAATCAAAGTCCTTGCCCCTCGGCTCCCTGTGTGGCAGTCCGGCGGCTCTGCCTCCTGCCCTTACCTCAAAGTCCCCCCGCGGTGGGGTCCCCCAGAGCCACTCACTGTGCTCCTTCCTGCCCGTCCTGTCGGGGGACCCCCTTCGGACTATCAGAGTTCTCCCAGCGATCCCGTCCCAGAGGAAACAGAGCCCGTCCCCCGCAGAGACCCCGAAGACAGATTCTGACAACAGCAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102464 lncRNA upstream 25048 37743525 ~ 37743731 (+) True G82140
TU102398 lncRNA upstream 107624 37658307 ~ 37661155 (+) True G82092
TU102369 lncRNA upstream 212178 37554453 ~ 37556601 (+) True G82063
TU102362 lncRNA upstream 235635 37526083 ~ 37533144 (+) True G82057
TU102360 lncRNA upstream 248041 37499117 ~ 37520738 (+) True G82056
TU102483 lncRNA downstream 44595 37825697 ~ 37825916 (+) True G82156
TU102579 lncRNA downstream 306291 38087393 ~ 38093714 (+) True G82228
TU102581 lncRNA downstream 306291 38087393 ~ 38090540 (+) False G82228
TU102584 lncRNA downstream 314519 38095621 ~ 38095902 (+) True G82229
TU102585 lncRNA downstream 315924 38097026 ~ 38097286 (+) True G82230
AMCG00010626 mRNA upstream 274039 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010627 mRNA upstream 286899 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010620 mRNA upstream 367980 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010621 mRNA upstream 375572 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010622 mRNA upstream 402287 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010635 mRNA downstream 14427 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010636 mRNA downstream 83960 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010641 mRNA downstream 179650 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010644 mRNA downstream 228957 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010643 mRNA downstream 262643 38043745 ~ 38050947 (+) True AMCG00010643
TU102276 other upstream 504730 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 517610 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 517610 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1674403 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1688887 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 105118 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 388054 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 465919 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 856401 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 1000977 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile