RNA id: AMCG00010635


Basic Information

Item Value
RNA id AMCG00010635
length 5087
RNA type mRNA
GC content 0.48
exon number 15
gene id AMCG00010635
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37795529 ~ 37809247 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGAATCAAGGCAGGCTCTTGTGATCATCAGTTACAGTTTTCTGGGAATAACCATCGCCTTTCCAGAAGGCTTGGTATTCGGCCCCTTATTCTAAACAGCACTGAGGTTTTAAACCCATAATACTCAAATTTCACTGCAGGAGAGAGTTCAGCTTTAAAGTAAAATGGAAAGTATGTAGAGGGACTTTGTCTTATTCTTAAATCATCATCTTTCTTTTTAGAGATGTCGGTGACCATATGCAAGATGACTTTTGGGGAGAAGATACTGCTGCTACTCCTTTTGACTCCAGTCTTCATTCTTTGTGCTATGGCTGGGATTACCGGTGGGAGGATTTACCCCGAGTCGCCGGTGCTGGAACTGAACACACAATTCACGGCCATTTGTGTCATGTCGAAACCTTTCATGGACCTCTCCAAGGCCACGGCTGATGATGTCTTCTGGAAGTTCAGAACGCACAAAGCGCCACGGGAGCTCTACACCAAGATCAATAGCTCGGCAGTCAGCATAACCGTCAACGTCACCAGGCAGCTGGAGAGCCCTCTCACCTGTAACGTTTTTGAATGGAGTCAGGTGCCGCAGAACGTTTATGGGATTTTCTTTACGGTGGGATACCCTCCCGAGACTCCTCGGAATATTACCTGTATGGTCCACCAGGTGAATTACAAGAGTCTGTCGCGGTCCATGCAGTGCTCCTGGGACCCTGGGAGCAGAGACCCCATACTGAACACCAGCTACAGCCTGTGTGCTACACAACATGAGTTTGTGACGTTGAGGCACCCATCTCAGAACAACACCGGCGAGCTGTCCTTCAAAGTCATGCCGGTTTTTGTTGTAGTGGTTGTGTGGGTAGAAGCCCAGAACCAGCTGGGGATAGCCGTGTCCGAAAAAATAACGCTGGATCCAGTAGAGATTGTGAAAACATTCCCACCCAAGGAGCCTGAGGTGATTTCTGAGGCGATGTTTCCGAGATCGCTGCTGGTCAAGTGGAAGCACCCAATCGATCCCTATATTATCGAGCTGGAGTACCACATCCGATACTGCGCCGCGGCCTCGGCGGTCCCTGAGTCTGACACGGACAGCTCCATCGAGTCCTTCAGACAGCAGGGCCTGACACCTTTCACCGAGTATGTCTTTCAAGTGaggtgcaaaaataaaaatatagaccATGGGTACTGGAGCGACTGGAGCCACAACGTCACCGGCAAGACACCAGAAGACAATCCCACGGACAAGCCAGATCTGTGGCGAGAGATCCAGCAAAGTGCCGACTCGGAGGAGACACTGGTCCGGCTGTTGTGGAAGGAGCCTCGTTCCGCTAATGGAAATATACTGAGATATGAAGTAAAATGGAAGCAACTGAACgcagaagaaaacaatgtcaCTGTTGTCAACGACACGAGCGTGGTCATTGCACTGCGCAGCCACCGGGACTACAGTGTCGGCGTGACAGCGTTCAACTCGAAGGGGCCGTCGCCCACAGCATCCCTGATCATCCCCAAGATAAAGAACGAGCACTCGCTGGGGGTGCAGCTCCACTGGTCCCTCAGAGAGAAGAAGGTGTGGGTCGGGTGGACGCCGCCGCGACGGACGGTAAAGGAGTACGTGATTGAGCGCAAGTCCCTGATCGATGGGGCCGTGGACTGGCAGCGTGAACCGAACAACAGCACCGGATCCTTTATAAAGGATCTGGAGAAATTCAAGCCGTACCTCATATCGGTCTATCCGGTGTCTGGGGGGAGGCCAGGAACCCACAGCTCTGTGGAAGTGTACCTGGAGCAAGGCCGTCCTTCTGTGGGTCCCACCGTCTCGGCGAGGAAGATGGGTAAAAACGACGCCGAGCTGGAGTGGAAAACGATCCCGGTGGAGAAGCGCAACGGGTTCATCACAAACTACACCATCATCTACAAGGCCGACGGGGGAGTCGAAAAGGTGATCCCCGTTGGCCCTGATACCCACATGTACACGCTAAGATCGCTGTCGAGTAACACGGTGTACACGGTTCACATAATGGCCTTCACCGAAGCCGGAGCCACAAACGGCACCAGCTACTCCTTCCCAACCAAGAAGTACGCACCTGGAGAGATCGAGGCCATGGTGGTGCCCATCTGCATCGGGTTCCTGTTTCTGACCGTGCTGATCGTGCTGTTCTGCATCAACAAGAAGGACATGATTAAGAAGCATATATGGCCACAAGTACCCGATCCTTCCAATAGCACGATTGCAGACTGGTCACCTGACTCTCCGACGGTGCCGGACCCCCCCAAAGACCCGAAGGCGTGCCAGGAGGGCAGCTGGATGGACGTCAGCGTGGTGGAGATCGACTCGTACGACAAAAAGTCGATGGGCGAGGACGACAAGGCCTCCCTCTTGCTGAAGAAGGGCAAGTACCTGTCCGAGGAGCACAGCAGCGGCATCGGCGGCTCGTCCTGCATGTCGTCCCCCCGGCAGAGCGTCTCGGACAGCGACGAGGGTGACTCGGGCCAGACCACCTCCAGCACGGTGCAATACTCCACCGTGGTGGCCAGCGCCTACAAGGGCCAGGTCCCGGCGCCACCCGTGTTCACGCGGTCGGAGTCCACGCAGCCGCTGCTCGACTCGGAGGAGAGGCCTGAGGAGCCGCCGCATCTCTACAGCAACCTGCGGAGCCGGGACGGCGACCGGAGGCCCTACTTCAAAAGAGACCAGACGGCCGACGGCACGCAGCCCGTCGGACTGAACCAGATCGAGATCGTGGGCCAGAATTCGGGCTCACTGGCGTTCTGCCCAGCCGAGGAGGGGAATCTGCTGGACCTGCTCACTGAGGACGCCCCTCCGCGGGCCAGGGAGACCCCCGAACTGACGCGAGGGGACAGGAATGTTGCGAAGAGCTACATGCCACAACAGAACGGCTACCGGCCACAGTGACCCGGCTGGATCCAAAACCTCAAGGATATTCACTTTCTTATCTTAAAGAAATGGAAGACGAAACATTTCCGTAGTGCCTCCGTTCATCACAGAACCATTACGTCAGATTTGGACAGAAGTTCCTCTGAATCGTAGAGGTGCATGAACTGAACGATGGATCCTTACACCATTATCACACAAATTTGAATGTTCGCAGTCTTTATATCCGACCCACGACTGATTGCTGCTGATTTTGCACCGGAGGTCCGTTACCCTTGGAAACTTGCTTCGTCTGAGAAGATTGAATCGGACGAACGTTGCGTCTTGGACGGTTCCACATTTGCACTAGTAGTAGCATCTCAGGCTTCATCTTTGGAATTTAAAAGTGTGTGCAGATCAGGATGTACAGAATGAgaccaattaaaaacatatctttAGGTTTTAAAGTCATTCACTAAGTTTGAGATTGATCATAAACATTCAATGGATGCGGATGCGGAGTTCATTATACTGACAGAACAAATTTAATGTGAATTTCCTTTTTAAGGAGTATTGGTCAGTGAataccatttttaatttataaggGGCAGTCTTACGTGTACTGAGCTCCCAATCACAGTATTTTCTTACCCGCGTGTCTGTATAATTAACTCGTAGACACAAGTTGGAAATCCAAATGCATTCCTGGGGCTGGTTGCATAAACATAAACAGTCTTGGTCTTAGTGTAATTAAGTCACGCTAATGATACTCGGTTAAAAACGTTGCATAAAATGTCCTCAGACGGGTCTTAGTCTTGATTTGAGCGACTAACTGTCAGATTGAGACTAGTCTGATATAGTTTTATGCAGCCGGCCTCAGTGCTCTTTATGTGGCTAGTCTCTCTTGTAATGTAGTTGGTAAATTGGACAAAAGTATATTCGACACTTTGGGATTGCACcaggcagttttttttaatatatatatttttaaatacttgttCATCAAACAAAGTTGAAATGCAGTCATGGAGAACAGCTGTCCACCCATGACTGTCCATCAAATGGTCTAATTGAAACGTATTCTTAGTATTACAATATTGTGGTTTCTTTGTCAAAACTTGGTCATGAATTTAATTTGGTTACATTTAAGGAATTGgtgttatttctgtttttaaccaCGCCTTTAGTTATTTGGTATAATTTTTATTAAACGGTCAACCTTGTATTGTATTGGTCACTTTGAGGACAACGTGGACAGTGATGCAGAACGCCTGTAAAAAGCATCGTCTTGAATGGCACCTGTTTATAATCGGCATAAAAAACTGAATGTAGAGCGATTTGGGTTAACTGGCACAACTGACATTGATAAGCAGGCTCTTGTCCACTCTTGGAGGAGATaagacagaataacagcctGGGCTGATTTCCTTTTAATACTGAAgtggtcattttttttatttgtttgtttaattactttataaGATGTCGTTCTATGCAACACAAGCGTGAACTTGTTCAGGGTCGTCTTAAAATATGTTCCAGCAATCATTGTTATAGCACTGGTCATATcgtcgggggggggggcagtgaagTCTAGAAAATAAAAGGTCTCTCCTAAGTGGGGAGAGAGAAGGTACAGTAGAGAGTAGGAGGGTTGGGGGACGCACGGATGGGACAGTAGGTCACATGACAAGCCCACGCATGTTTGGAGCTGCAGATGTGTGAACACCAAACGGTGTCTGCTGGAAACAcacctttacattttcattttccaagttGTAAGCTATTATGACAACTGCCGGTGATAAGTCTTTTACTTGTATTGTCTCCAGAATTGTTTGCTGTTCTTATCAAGTTGTCTTCTCTACTTTAAACCCAACACTAATATTACTGCTTTAACcaaaaagatatatatagagTTGGCATTATAGATGTTGACCAGTGTTTTGTAGCTTCTGTTCCACTGCATAGGTCTTGCCACTATTATTTTACTGAAGTAGTGCATGTCtagaatataaatgttatttttacagaaaTCCTAAACCTACAAactgtgtaataaataaaatggaagaaaatgcaTATCCAGTCACACTTGCTTCGTCTCCGTTTCCTTTTTTTCACCTCTTACTGTTCCGGTGTTGAGCGTTATAGACAAACTAAGACCAATGTGAAGATATTTTTGCAAGAAGGAACACGATGTAGCAAAGTGATGCTCTAGAT

Function

GO: NA

KEGG:

id description
K05060 IL6ST, GP130, CD130; interleukin 6 signal transducer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102464 lncRNA upstream 51798 37743525 ~ 37743731 (+) True G82140
TU102398 lncRNA upstream 134374 37658307 ~ 37661155 (+) True G82092
TU102369 lncRNA upstream 238928 37554453 ~ 37556601 (+) True G82063
TU102362 lncRNA upstream 262385 37526083 ~ 37533144 (+) True G82057
TU102366 lncRNA upstream 284697 37510231 ~ 37510832 (+) True G82061
TU102483 lncRNA downstream 16450 37825697 ~ 37825916 (+) True G82156
TU102579 lncRNA downstream 278146 38087393 ~ 38093714 (+) True G82228
TU102581 lncRNA downstream 278146 38087393 ~ 38090540 (+) False G82228
TU102584 lncRNA downstream 286374 38095621 ~ 38095902 (+) True G82229
TU102585 lncRNA downstream 287779 38097026 ~ 38097286 (+) True G82230
AMCG00010634 mRNA upstream 14427 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010626 mRNA upstream 300789 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010627 mRNA upstream 313649 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010620 mRNA upstream 394730 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010621 mRNA upstream 402322 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010636 mRNA downstream 55815 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010641 mRNA downstream 151505 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010644 mRNA downstream 200812 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010643 mRNA downstream 234498 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010648 mRNA downstream 438840 38248087 ~ 38251652 (+) False AMCG00010648
TU102276 other upstream 531480 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 544360 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 544360 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1701153 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1715637 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 76973 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 359909 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 437774 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 828256 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 972832 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile