RNA id: AMCG00010636


Basic Information

Item Value
RNA id AMCG00010636
length 1686
RNA type mRNA
GC content 0.56
exon number 12
gene id AMCG00010636
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37865062 ~ 37873485 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGACGATGTGAAACCGCTGCTTGCGTCCgagagagctggagagagcTATGCGGGAGCCGAGCGCAGTGTCTTGGAGTCCTTTGACCCCAGGTCTAAAAGCCACTGTCCACGCTCAAGCCATCTCCTCCCCGCCCCGCACAGGCCTTTCCACGTGGAGCCGCGCAACATCGTAGAGGAGGACGCCCAGGAGCGAGTGTCGGCCGAGGCCTCGGTGATGAGCAGCAGGGTGCACTACTACGGCCGGCTCACCGGTTCCTCGGACAGACTGCTGGTTCCTCCGGACCATGTGATCCCCGGGCCCGAGGAGATTTATGTTTACAGCCCCCTGGGGACGGCCTTCAAAGTGGAAGGAAGTGTTGATGGGTCTGGAAAGAACCCTAGCATCGTCACCATGTATGTATCCCGAACCCTCAGGCTGGCCGGGCCTGTCGCGGGATTCACGTTCGGCATTCTCATCATTGTGTCCATGGGGCTGCTGACGCTGTACTGCTGCTACAGGGTATTGAAGTCACGCGCAGCGATACCCTTTATAGATACCTCAGACTGGGAGTTTCCGGATGTTTGCCGATATTACTTCGGCGCCTTTGGCCAGTGGTCCAGTCTTGTGTTTTCCATGGTGTCCCTGATTGGGGCAATGGTTGTCTACTGGGTGCTCATGTCCAACTTCCTGTTTAATACTGGGaaatttatttacaGCATCTCAGTCCTACTTTTGGCAATTTCACCAACAGAGCGCTTTCTCTTTGCAGACTTTGCAAACAACGTCAGTGTGGCTGATTTGGAGTTTGGGACCAATGGGTCTGAAAGAGTGATCTGCCCGTTCCCCAACACGGGCCACTTGAACTGCACCGGGGACGGGTTCTCCGCCACGGACAACGGTACCGGCACTCTGTTCGACAAATGGTGGCACAAGACTAACACCATCCCCTTCTACCTGATCATCCTGCTGCTGCCCTTGCTGAATTTCAGATCGGCGTCTTTCTTCGCCAGGTTTACCTTTCTGGGGACGATATCGGTCGTCTACCTCATCGTTCTGGTGACCCTGAAAGCCGCCCGCCTGGGTTTCCATCTGGAGTTCCACTGGTTTGAGTCGACGCAGTTCTTTGTGGCAGAGTTCAGACTGCTGTTCCCGCAGCTGACTGGAGTTCTCACCCTCGCGTTCTTCATCCACAACTGTGTGATCACCCTCCTGAAGAACAACAAGGTCCAGGAGAACAACGTGAGTGCGGCCAACACCCACCCGGCTCTGACCCCTCTACCTCTCGTGCTTTTGCAGAACTTTCTGGACAACTTCCCCAGCAGTGACATCATGGTGTTTGTGGCCCGGGCCTGCCTGCTCTTCCAGATGACCACCGTGTACCCCTTACTGGGCTACCTGGTCCGAGTGCAGTTGATGGGGCAGTTCTTTGGGAATCACTACCCTAGTTTTTTCCACGTGTTCACCCTGAATTTGTTCATAGTGGCAGCAGGTGTCGTTATGGCAAAGTTTTTCCCCAACATCGGTTCCATTATCAGGTACTCCGGGGCGACTTGCGGCCTGGCCTACGTGTTTGTGTTCCCCTCCGTCATCCACATGATCTCGCTGCGGCGCGCGGGGGAGCTGCGCTGGCCCTCTGCCCTCTTCCACAGCCTGCTCATCGTGCTGGGCATCGCCAACTTGGTGGCTCAGTTCCTCATGTGA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K14995 SLC38A9; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102483 lncRNA upstream 39146 37825697 ~ 37825916 (+) True G82156
TU102464 lncRNA upstream 121331 37743525 ~ 37743731 (+) True G82140
TU102398 lncRNA upstream 203907 37658307 ~ 37661155 (+) True G82092
TU102369 lncRNA upstream 308461 37554453 ~ 37556601 (+) True G82063
TU102362 lncRNA upstream 331918 37526083 ~ 37533144 (+) True G82057
TU102579 lncRNA downstream 213908 38087393 ~ 38093714 (+) True G82228
TU102581 lncRNA downstream 213908 38087393 ~ 38090540 (+) False G82228
TU102584 lncRNA downstream 222136 38095621 ~ 38095902 (+) True G82229
TU102585 lncRNA downstream 223541 38097026 ~ 38097286 (+) True G82230
TU102586 lncRNA downstream 236764 38110249 ~ 38110555 (+) True G82231
AMCG00010635 mRNA upstream 55815 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010634 mRNA upstream 83960 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010626 mRNA upstream 370322 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010627 mRNA upstream 383182 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010620 mRNA upstream 464263 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010641 mRNA downstream 87267 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010644 mRNA downstream 136574 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010643 mRNA downstream 170260 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010648 mRNA downstream 374602 38248087 ~ 38251652 (+) False AMCG00010648
AMCG00010650 mRNA downstream 403832 38277317 ~ 38278369 (+) True AMCG00010650
TU102276 other upstream 601013 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 613893 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 613893 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1770686 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1785170 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 12735 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 295671 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 373536 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 764018 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 908594 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile