RNA id: AMCG00010641


Basic Information

Item Value
RNA id AMCG00010641
length 645
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00010641
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37960752 ~ 37971680 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGAGGTGCAGGAAACGGGTGCAACGCAGCAAGCACAGGATTGTGTCGTTTGTCCCAGCGATGCTGGGCTGAAGGACGTGCTGTCGGACTGGGACTCGGAGATGGGCAGCACGGAGCTGCTGAAGGGCAGCACTGACACGCTCAACAACAGCAGCAAGAGCGACCTGGATGCCGCGCGCAGGCTGGCCCGGCGCCTCTACCACCTGGAGGGCTTCCGGCGCTCGGACGTGGCAAAGCACTTGGGGAAAAACAACGAGTTCAGCAAGATGGTCGCCGAAGAGTACCTCAAGTTTTTTGAATTCACTGGAATGACTCTGGACCAATCTCTGAGgCGCTTCCTGAAAGCTTTTGCACTAATGGGTGAAacccaggagagagagagggttttaATCCACTATTCCAATAGGTACTATCAATGTAACCCTACCACCATTTCCTCACAAGATGGAGTTCATTGCCTTACTTGTGCGTTGATGCTGCTAAACACCGACCTTCATGGCCAcAATATCGGAAAGAAGATGACCTGCCAAGAGTTCATCAACAACCTGGACGGACTCAACGGAGGCCAAGATTTCCCCCGAGACCTTCTGAAGGTAGGGGTCAAGAAGCCAAATCATCCTCATAAGATGGTCAGACTGTAA

Function

GO: NA

KEGG:

id description
K12494 PSD; PH and SEC7 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102483 lncRNA upstream 134836 37825697 ~ 37825916 (+) True G82156
TU102464 lncRNA upstream 217021 37743525 ~ 37743731 (+) True G82140
TU102398 lncRNA upstream 299597 37658307 ~ 37661155 (+) True G82092
TU102369 lncRNA upstream 404151 37554453 ~ 37556601 (+) True G82063
TU102362 lncRNA upstream 427608 37526083 ~ 37533144 (+) True G82057
TU102579 lncRNA downstream 115713 38087393 ~ 38093714 (+) True G82228
TU102581 lncRNA downstream 115713 38087393 ~ 38090540 (+) False G82228
TU102584 lncRNA downstream 123941 38095621 ~ 38095902 (+) True G82229
TU102585 lncRNA downstream 125346 38097026 ~ 38097286 (+) True G82230
TU102586 lncRNA downstream 138569 38110249 ~ 38110555 (+) True G82231
AMCG00010636 mRNA upstream 87267 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010635 mRNA upstream 151505 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010634 mRNA upstream 179650 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010626 mRNA upstream 466012 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010627 mRNA upstream 478872 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010644 mRNA downstream 38379 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010643 mRNA downstream 72065 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010648 mRNA downstream 276407 38248087 ~ 38251652 (+) False AMCG00010648
AMCG00010650 mRNA downstream 305637 38277317 ~ 38278369 (+) True AMCG00010650
AMCG00010652 mRNA downstream 334574 38306254 ~ 38317804 (+) True AMCG00010652
TU102525 other upstream 72589 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 696703 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 709583 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 709583 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1866376 36091539 ~ 36094376 (+) False AMCG00010585
TU102591 other downstream 197476 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 275341 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 665823 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 810399 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 810399 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003731 False 886 processed_transcript 0.50 8 NC_007121.7 7083771 ~ 7210108 (+)
grasscarp (Ctenopharyngodon idella) CI01000304_01054942_01133130.mRNA True 2583 mRNA 0.53 14 CI01000304 1054942 ~ 1133130 (-)