RNA id: AMCG00010648


Basic Information

Item Value
RNA id AMCG00010648
length 906
RNA type mRNA
GC content 0.62
exon number 7
gene id AMCG00010648
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38247021 ~ 38252010 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGTCTATGCCAGCTCTTTCCACCGGAGCGGAGGTGGGGTGATCCTTGAGTCCACAGACCCCTCGCAGGCCGACTGGATCACAGCCCACGCGGACGCCTGCGGACTGACGGTTCCCGCCGTGCAGCGATGCTGGGGGAGATTTCTGACGCTGCAGCCGGACAGCGATGGAAACGTGCCGAGCAGTGGCTTCACCACCGGCAGCGTCATCAGCTCTCAGCTGGTGCAGCAGTTGCCTGTGTCAGCCGGCGGTCTGCTCACCTTCCAGACCTACTGCAGCGCCGTGAATTGGCTCTCTGACTCCACCGTGGAGACCAAACTGAGAGGCCTGTATCAGGCCGTGTCCTGCTGCGTCCCACTCGACAAGGAGGCCCTGGACAGACTCCTGACCGAGCTCTACCCACAGGACGCCCCCGGGGACATCAGACAGCTCTCCGGGCTGATCCTGAGGGAGGTCGACACCAAGAACCAAGGGTTTATTGATGAAGACCAATTCACCGTGTGGCTGCGAAGACTCCTGCCCGAGACACTGACGTCCTCGCTGCACTTCCCGGCGCTGCCAAGTAAGATTGCCGTGGCCCACGAGCAGCACCGTCCCCAGAGGGGTCCAATTCAGACTGAAGACACCACGAACGTCACGGAGAACCAGCTGCAGTTAACGGCAGCAGAGATGAGCCGGCGCCGGAGGGACTGGAGACTTCTGGCAAATCGCCTCGGCTTCCTGGAGAAGGACTGCCAAGCCTTCGAAAGGAAACATCCAGAAACAGAAAACCAGGTCCTGGAGATGCTGCTGCAGTGGCACCGTCGGGCGCGGCGGACCGGTGCAGCACGTGAGCTCGGGGAGGCGCTCAGGGCCAGCGGGAACACGGACATCGACAACCAGGTGTTCCAGCTCGCCTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102589 lncRNA upstream 91489 38156397 ~ 38156598 (+) True G82234
TU102586 lncRNA upstream 137532 38110249 ~ 38110555 (+) True G82231
TU102585 lncRNA upstream 150801 38097026 ~ 38097286 (+) True G82230
TU102584 lncRNA upstream 152185 38095621 ~ 38095902 (+) True G82229
TU102579 lncRNA upstream 154373 38087393 ~ 38093714 (+) True G82228
TU102610 lncRNA downstream 33927 38285579 ~ 38287528 (+) True G82250
TU102627 lncRNA downstream 100567 38352219 ~ 38353833 (+) False AMCG00010655
TU102651 lncRNA downstream 116017 38367669 ~ 38370042 (+) True AMCG00010656
TU102649 lncRNA downstream 171828 38423480 ~ 38425049 (+) True G82285
TU102751 lncRNA downstream 223198 38474850 ~ 38475108 (+) True G82338
AMCG00010643 mRNA upstream 197140 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010644 mRNA upstream 222758 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010641 mRNA upstream 276407 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010636 mRNA upstream 374602 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010635 mRNA upstream 438840 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010650 mRNA downstream 25665 38277317 ~ 38278369 (+) True AMCG00010650
AMCG00010652 mRNA downstream 54602 38306254 ~ 38317804 (+) True AMCG00010652
AMCG00010653 mRNA downstream 74033 38325685 ~ 38339014 (+) True AMCG00010653
AMCG00010655 mRNA downstream 96626 38348278 ~ 38353962 (+) True AMCG00010655
AMCG00010656 mRNA downstream 118372 38370024 ~ 38372651 (+) False AMCG00010656
TU102591 other upstream 78556 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 359924 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 984038 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 996918 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 996918 37235766 ~ 37251169 (+) False G81971
TU102794 other downstream 385851 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 530427 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 530427 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 530427 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 530427 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile