RNA id: AMCG00010673


Basic Information

Item Value
RNA id AMCG00010673
length 1860
RNA type mRNA
GC content 0.58
exon number 12
gene id AMCG00010673
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38652885 ~ 38661453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGTCGTCCTGCATTATAAGAACCAGCAAGGTCCTTTACAGGATTTAATAGCAGTAGCCGAGAAAGCCCTGGAAGATTTTCCCTGTGCCCCTTTGCCCAGATTTACCCCGTGGTACCCCACCGACAGCACCCTGCCTCTGACACCCAGAAAGCGGCCTCCGGTTATTTTGCCTGAAGAGGCGGAACGGATCGAGGGTGGCCTGTGTTCTTCACAGCCCTTGGTGGCCTCTCAGGGCTACGACTGCACGGTGGGCCTGCTGGAGTTCTGCACCCGTCCCGGCAGGGCGAGGACCCTGCAGCGGGCATCGTCTCTGCAAGCAGGACCGACACGGTGCCAGGACAGCGCttcagagggagggagagggttcAGGAGGTCGTGGAGCGTCTCTGTTCCTGGCAGGATGCTCGGCCAGGAAATCCATCCTCTCTCCGGGCCACTCCGGGGTGTGGTGGAGGGTCTCGGCCTGCACTCGCTGCAGAGGGCAAAGTGGGTCATCGAGGAGTCCAACTGCAGCAGGGTGCGTCTGGAGCACACCTGGGAGGCGCTGAGCAGAGCGATGAGGCGATGCATGCTGCCCTCCTGCCACGCTAATATCCAGAGGGACACCGGCCAAATATGGGTGTTCTGTGACATTGTGTACTTGATGCGGTTGACCAAGCCGACTCTCTTCACCAACATGCCGGTGACATGCGAGGACCGGGATCTGCCAGGTGACCTCTTCAGCCGGTTGATGAAGGAAGACCCGTCCACCATAAAGGGGGCAGAGACTCTCATGCTGGGGGAGATGCTGACGCTTCCTCAAAACTTCGGGAACATTTTCCTGGGGGAGACCTTCTCCAGTTACATCAGCGTGCACAACGACAGCACGCAGGTGGTGAAGGACATCCTGGTGAAGGCTGACCTGCAGACCAGCTCCCAGCGACTGAACCTCTCTGCGTCCAACTCGGCCGTGGCGGACCTGAAGCCGGAGTGCTGCATCGACGACGTCATCCACCACGAGGTCAAGGAGATCGGCACGCACATTTTGGTCTGTGCAGTCAGTTACACGACCCAGACCGGGGAGAAGTTATACTTCAGAAAGTTCTTCAAATTTCAGCCCGAGAAACCTGCTTTCAGCCTGCACTCTCTCTTCAACCAGGTGCTGAAGCCGCTGGACGTGAAGACCAAGTTTTACAATGCTGAGACGGACGAGGTGTTCCTGGAGGCCCAGATCCAGAACATCACCACCTCCCCCATGTTCATGGAGAAGGTGTCCCTAGAGCCGTCCATCATGTACAACGTGACCGAGCTCAACACCGTGTTCTCCACCTTTGGAAAGATGTCCTACCTGCAGCCCATGGACACACGCCAGTACCTGTACTGCCTGAAGCCCAAGCCCGAGTTCGCGGAGAAGGCAGGGGTGATCAAGGGAGTCACGGTCATCGGCAAACTGGACATCGTGTGGAAGACCAACCTGGGCGAGAGGGGGCGGCTGCAGACCAGCCAGCTCCAGAGGATGGCTCCCGGCTACGGTGATGTGAGGCTCTCCCTGGAGCTCATACCCGACACGGTGCATTTAGAGGAGCCGTTCGACATCACCTGTAAAATAACGAACTGCAGTGAGAGGACCATGGACCTGGTTCTGGAGATGTGCAACACCAGCTCCATACACTGGTGCGGCGTCTCGGGCAGACAGCTGGGCAAGTTGAGCCCCAGCTCCTCTTTGTACCTCACCCTCAAACTCCTGGCTTCAGTCCAGGGCCTGCAGAGTATATCTGGGTTGCGGCTCACGGACACATTCCTGAAGAGGACCTACGAGTACGACGACATCGCCCAGGTGTGCGTCGTCAGCTCCTACTTGGACCCGGAGAGCTAA

Function

GO: NA

KEGG:

id description
K20310 TRAPPC13; trafficking protein particle complex subunit 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102776 lncRNA upstream 88602 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 169561 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 177777 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 227836 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 282843 38367669 ~ 38370042 (+) True AMCG00010656
TU102860 lncRNA downstream 130872 38792325 ~ 38797886 (+) False AMCG00010687
TU102926 lncRNA downstream 365631 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 441467 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 490354 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 555374 39216827 ~ 39217078 (+) True G82520
AMCG00010681 mRNA upstream 14353 38636476 ~ 38638532 (+) False AMCG00010681
AMCG00010672 mRNA upstream 18940 38631804 ~ 38633945 (+) True AMCG00010672
AMCG00010669 mRNA upstream 118075 38515937 ~ 38534810 (+) True AMCG00010669
AMCG00010671 mRNA upstream 164599 38487689 ~ 38488286 (+) True AMCG00010671
AMCG00010670 mRNA upstream 165358 38484121 ~ 38487527 (+) True AMCG00010670
AMCG00010684 mRNA downstream 10744 38672197 ~ 38673526 (+) True AMCG00010684
AMCG00010675 mRNA downstream 10771 38672224 ~ 38675740 (+) True AMCG00010675
AMCG00010674 mRNA downstream 18355 38679808 ~ 38684359 (+) True AMCG00010674
AMCG00010685 mRNA downstream 76996 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010687 mRNA downstream 120749 38782202 ~ 38796080 (+) False AMCG00010687
TU102794 other upstream 12760 38637503 ~ 38640125 (+) True AMCG00010681
TU102593 other upstream 400875 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 483354 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 764722 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1388836 37261324 ~ 37264049 (+) True G81987
TU102818 other downstream 120626 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 120626 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 120626 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 120626 38782079 ~ 38790768 (+) False AMCG00010687
TU103177 other downstream 1187493 39848946 ~ 39849369 (+) True G82671

Expression Profile