RNA id: AMCG00010674


Basic Information

Item Value
RNA id AMCG00010674
length 693
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00010674
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38679808 ~ 38684359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatttatttcgtGAGACAGACTTCGCCGAGTTCAGCGGGACACTGGTGGAGACTGACTTCGTGGAGGTGCCGTCCCAGATGCTGGAGAACTGGGTGTGGCAGAAGGAACCCCTGAAGAGGATGTCAAGGCACTATAAAGATGGGAGCCCCATTCCTGAAGACCTGCTGGAGAAACTCATCGCCTCCCGGGTGGCCAACACGGgCCTCCTGAACCTCCGGCAGATCGTCCTGAGCCGAGTGGACCAGGCGCTGCACACCAAACCCAGCGCCGACTCGGCCCAGGAGTTCGCCAAACACTGCCAGCAGATCCTCGGAGTTCCTGCCACCCCAGCTGAATGCCTCTGTTTCGCCGCAGGGACCAATATGACGGCCGGTTTCGGTCACTTGGCCGGGGGCTACGATGGCCAATACTACGGATACCTGTGGAGCGAAGTGTTCTCCTTGGACATCTTCTTCAGCCgctttgagagagagggaatcaTGAACCCTGAGGTTGGCTTGGAGTACAGGAGGGTCATACTGGAGGCTGGGGGCTCAGCTGATGGGATGGACATGCTGAGAAAATTCCTGGGCCGGGAGCCGAGCCAGTTGGCCTTCTTCCAGTGCAAGGGTCTGGCCTGCCAGGCGGAGGAGGCGGCCGCACAGTCACATCCCCCTCGAGAGGAGCCACAGGAAGGGCAGCCGAAGTGA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102776 lncRNA upstream 115525 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 196484 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 204700 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 254759 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 309766 38367669 ~ 38370042 (+) True AMCG00010656
TU102860 lncRNA downstream 107966 38792325 ~ 38797886 (+) False AMCG00010687
TU102926 lncRNA downstream 342725 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 418561 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 467448 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 532468 39216827 ~ 39217078 (+) True G82520
AMCG00010675 mRNA upstream 4068 38672224 ~ 38675740 (+) True AMCG00010675
AMCG00010684 mRNA upstream 6282 38672197 ~ 38673526 (+) True AMCG00010684
AMCG00010673 mRNA upstream 18355 38652885 ~ 38661453 (+) True AMCG00010673
AMCG00010681 mRNA upstream 41276 38636476 ~ 38638532 (+) False AMCG00010681
AMCG00010672 mRNA upstream 45863 38631804 ~ 38633945 (+) True AMCG00010672
AMCG00010685 mRNA downstream 54090 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010687 mRNA downstream 97843 38782202 ~ 38796080 (+) False AMCG00010687
AMCG00010686 mRNA downstream 183439 38867798 ~ 38880138 (+) True AMCG00010686
AMCG00010689 mRNA downstream 249984 38934343 ~ 38962861 (+) True AMCG00010689
AMCG00010690 mRNA downstream 294321 38978680 ~ 38983811 (+) True AMCG00010690
TU102794 other upstream 39683 38637503 ~ 38640125 (+) True AMCG00010681
TU102593 other upstream 427798 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 510277 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 791645 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1415759 37261324 ~ 37264049 (+) True G81987
TU102818 other downstream 97720 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 97720 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 97720 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 97720 38782079 ~ 38790768 (+) False AMCG00010687
TU103177 other downstream 1164587 39848946 ~ 39849369 (+) True G82671

Expression Profile