RNA id: TU102794


Basic Information

Item Value
RNA id TU102794
length 2431
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00010681
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38636476 ~ 38640125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcagcaggggatcaaatacttttttccctcactgtatttgatATACGATACAGGACACATGATTTGAAGGAAACCGTTAGCAGAGAACCAGATCTGTTCTCGACAAGAGAGAGAGCTTTAAACGGACACGTGTTAATGTTTGGCCATGTGACCGTGACCCATGTGGTTTAGTGTAACCTACTCCTATCCAAGACCATTCATGTGATGTTTGGGTACAGGTGAAGACAAATGGCATCTGCGTTTCTGGGATGGTGAGCCTCTGCTTTGTTGTAAActgtatttatctgtttttatacatgtacAGTGCCACCCCACCTTTCAGAGCGTCGTTATTCAGTAAAGTTGACTTCCGGTAGAAGACCGTGTCCGTCATTAGAGAGGacgtgtgtttgtttcacacatTGCTCCTGTCTGTCTCGCAGGGTTCAACGTGGAAACCGTGGAATACAAAAACCTGAAGTTCACCATCTGGGACGTGGGTGGCAAGCATAAACTGCGCCCCCTGTGGAAACATTACTACCTGAACACACAAGCCGTGGTGTTCGTGATCGACAGCTGCCACCGGGACCGGCTGATGGAGTCACACAGCGAACTCGCCAAGCTGCTGACGGAGAAGGAGCTGCGCGACGCCCTGCTGCTCATCTTCGCCAACAAGCAGGACGTGGCCGGCGCCGTGCCCGTGGAGGAGATGGCCGAGCTGCTTAGCCTTCACAAGCTGTGCTGTGGCCGCAGTTGGCACATCCAGGGCTGCGACGCCCGCAGCGGCGAGGGGCTCCACGAGGGGCTGGACTGGCTGTCCCGGCAGCTTGTGGCCGCAGGGGTGCTGGACGTGGCCTGAACCCCatccccgccccccccacatcCCCACATCCCCGGCCACATGTGtgctccccccccccttctctcccctctGAGTTGTGTAGTATTAATTTCACCCCGATAGCTACACAGTGACCATTGTGCGTTTGCCATCTGGGTTCCTGCAGCGCCTCGTTGTTCAGTCATGCAGCTGGTCTCCTCCCACGCTCACCCTGTTTGACCCCGAACGCCCAGCCTCCTCAAGGTATTTTGGAGCATCTTGAGCACTCCTGGGATACCCTGCCCTGCCAAGCATTCTGACACCCCATTCCAGAACTCGCCCGGATGTTCATGACCTGGAAAAGGCAAGGGGGCCTCCTCCCTCAGACCGTGACAGTTATGATAAGGTTAACGAATGAAAAATGACtaatcctcctcctcctgttaAGTGCCTGATGACTGTTACCCCCGCCGCCCACCTCAAGGCTCGGAGATGGTTGCAGATGCCGCTCCCGCCCCACAGGGGGGTCTCACAGCTGGACAGGGTCCACATTGGCCTGAGCTCGGCCAGAGAGTGTTGCCAGCCTTGATCCTTTCATTCTTCCCCTCCCCCCAGGCATCTGAGTCCAGAGTACCATCTCTTCTCCCACAGGGCGGTGTCTACAGGACACATAGTCAGCTCAGTTCATTCTGGCCTCCGTCTCAAACTGAAGTCACGGTGAAGCAAAACGGGGGAACACTTtgagaataaacacacacagcaaatgtTAAGCCTGCGCACGGGGCAAGTTACAGTGGCATACGATAAACTAGGGAACCCGTAGGCTAACGGGCAGGAGATGCAGTTAAATACAAAGACTGCACTGTTCTCAACCCATACTTGTATATAAAGGATATTGTTAAAGTTGAAAAGGTCAGAATCCAGGTCAGAGGTGAAGTGATTTGTCAACACCTAAAGCATTCTCGCCTCTCCTGTTCTGAGGAGAGGACCCCGACTGGCCCGCCGCTCTGCTGCCGGTGGGATCAGGTGTGAGGCCGGTTTAAAACTCGACCCAAACCGCAAGGCTGTGGATCTTGGGATTCACGCTTTGGACTTTTCTCTCCACTGCAGAATGTGATATTCTTAATTGTGTGCAACTGTGACTAactgctgtatatatatgtatttaaaatttaaataaaaaagcaacatttcagCTCATGCTAGATACAGTGCAGCCTGGATTAATGTTACAAACTTTCCATCCAAGACTAGTCTTGCTTCATaggatttactgtattttgacaTTTACTTTATGAAACCCTCGTCGGGActttttattgtactgtattaagGAACATCTTTGTGCTTTCTAGATAAATTCAAAGGAAACGTAGGTTTGGATTTATTCTACCGTCCTCGGTCGACGTCATCGCTGTTCGAGGTTTACTACTCGTACCGatttaaaagcatgtttaaaTCGGAGGCATCTGGTAACCGTTCGCCTAGGCTGACCGCCCCTGCTGCGGCCGAGCGTGAGCACGGGACACGTCAGGACGGCGGCATTTGTAACTTGTGTGAACTTCTCATGACTGCTTTTGTATACCATTCACACTGTAGAGACTTTTATGCTAATAAAGACGAACTGGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102776 lncRNA upstream 73220 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 154179 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 162395 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 212454 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 267461 38367669 ~ 38370042 (+) True AMCG00010656
TU102860 lncRNA downstream 152200 38792325 ~ 38797886 (+) False AMCG00010687
TU102926 lncRNA downstream 386959 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 462795 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 511682 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 576702 39216827 ~ 39217078 (+) True G82520
AMCG00010672 mRNA upstream 3558 38631804 ~ 38633945 (+) True AMCG00010672
AMCG00010669 mRNA upstream 102693 38515937 ~ 38534810 (+) True AMCG00010669
AMCG00010671 mRNA upstream 149217 38487689 ~ 38488286 (+) True AMCG00010671
AMCG00010670 mRNA upstream 149976 38484121 ~ 38487527 (+) True AMCG00010670
AMCG00010661 mRNA upstream 163342 38468372 ~ 38474161 (+) True AMCG00010661
AMCG00010673 mRNA downstream 12760 38652885 ~ 38661453 (+) True AMCG00010673
AMCG00010684 mRNA downstream 32072 38672197 ~ 38673526 (+) True AMCG00010684
AMCG00010675 mRNA downstream 32099 38672224 ~ 38675740 (+) True AMCG00010675
AMCG00010674 mRNA downstream 39683 38679808 ~ 38684359 (+) True AMCG00010674
AMCG00010685 mRNA downstream 98324 38738449 ~ 38777045 (+) True AMCG00010685
TU102593 other upstream 385493 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 467972 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 749340 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1373454 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 1386334 37230428 ~ 37251169 (+) True G81971
TU102818 other downstream 141954 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 141954 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 141954 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 141954 38782079 ~ 38790768 (+) False AMCG00010687
TU103177 other downstream 1208821 39848946 ~ 39849369 (+) True G82671

Expression Profile