RNA id: AMCG00010684


Basic Information

Item Value
RNA id AMCG00010684
length 510
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00010684
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38672197 ~ 38673526 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTACAGAGCCAAACCCAGCCTGAGGATGACGTTGCAGGCCGCCGTCCCGCAGGGCTCCACTCGGCGCTGTCACCTGTCCGCCGGCAGCAGGAACCGCCTGCGATGGGACCTGTCCCCGGACGACATCCGGCGCCGGACGGAGGAGCTGATCCAGAGAGTTAAACGGGTGTACGACAGCGTGGGAGCGCTGGACATGGACCGGGTCTCATATGAAAACACCCTGAGAGCTTTGGCAGATGCAAAAGTCACATATACAGTGGAGAGGCACGTGCTGGATTTCCCGCAGTATGTCTCAGCCTGCCGGGAGCTGCGGGCGGCAAGCACCGAGGCGGACAAGAGGCTGTCAGACTTCGACAGACATCGCCGGGGGACAGAGCACAAGGTGTCGGGTCACGTCACTCCCTCCTGGCTATCGCTCCTGCACAGGGACCGAAATAAACCACTTGAGAGCAGAGAGGGCAGACGGGACATTCTGTACACTTATCAATCAGGCTTTCGTGTCTTGTGA

Function

GO:

id name namespace
GO:0061061 muscle structure development biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102776 lncRNA upstream 107914 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 188873 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 197089 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 247148 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 302155 38367669 ~ 38370042 (+) True AMCG00010656
TU102860 lncRNA downstream 118799 38792325 ~ 38797886 (+) False AMCG00010687
TU102926 lncRNA downstream 353558 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 429394 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 478281 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 543301 39216827 ~ 39217078 (+) True G82520
AMCG00010673 mRNA upstream 10744 38652885 ~ 38661453 (+) True AMCG00010673
AMCG00010681 mRNA upstream 33665 38636476 ~ 38638532 (+) False AMCG00010681
AMCG00010672 mRNA upstream 38252 38631804 ~ 38633945 (+) True AMCG00010672
AMCG00010669 mRNA upstream 137387 38515937 ~ 38534810 (+) True AMCG00010669
AMCG00010671 mRNA upstream 183911 38487689 ~ 38488286 (+) True AMCG00010671
AMCG00010674 mRNA downstream 6282 38679808 ~ 38684359 (+) True AMCG00010674
AMCG00010685 mRNA downstream 64923 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010687 mRNA downstream 108676 38782202 ~ 38796080 (+) False AMCG00010687
AMCG00010686 mRNA downstream 194272 38867798 ~ 38880138 (+) True AMCG00010686
AMCG00010689 mRNA downstream 260817 38934343 ~ 38962861 (+) True AMCG00010689
TU102794 other upstream 32072 38637503 ~ 38640125 (+) True AMCG00010681
TU102593 other upstream 420187 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 502666 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 784034 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1408148 37261324 ~ 37264049 (+) True G81987
TU102818 other downstream 108553 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 108553 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 108553 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 108553 38782079 ~ 38790768 (+) False AMCG00010687
TU103177 other downstream 1175420 39848946 ~ 39849369 (+) True G82671

Expression Profile