RNA id: AMCG00010686



Basic Information


Item Value
RNA id AMCG00010686
length 561
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00010686
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38867798 ~ 38880138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCCGAGGTGCGTTAACGCGGTCCGACTCCTGCGCGTTCCTCCAGCCTCATTTATTGATGTTGGAGTTCCTCTTAATGTCTAGGGTTTCAGGGAACACACCCTTAATCGCTTTGAAGGACTTGGGGAAGTACAAActggaTCACATCTTGTATCCTCCCTCCATCCCGCTGCGTAAGTCCAGCAACCCGGAGGTCCTGTACAGCTCCGGCAAGGGCTTCAAATACAAGCGGCAGCTCAGCGAAGATGGGCAGCACTTCCGCAGGGGGAGTCTCGGAGGCGCGCTGACCGGGAAGTACCTGCTGCCCTACGTCTCAACCCAGCAGGCATGGACCTCCCCTTCAGAGACCTCCAACCTGGTCCGCATGCGCTCCCAGACCCTTGGGCAGTCGGCCCCCTCGCTCAGTGCCAGCCTGCTCTCTCACCGAGGAGGCCTTTCCATGCCGCCCCCCTCTGGGCCGCTACAGCTCCTGCGCCAGCCGTCCACCTCCACGCCCTTCGGTGTCGCCTCTCTGTCTCCCAATCTCGCGCACCGCACTCCTGACTATGATAAAGTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102860 lncRNA upstream 69912 38792325 ~ 38797886 (+) False AMCG00010687
TU102776 lncRNA upstream 303515 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 384474 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 392690 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 442749 38423480 ~ 38425049 (+) True G82285
TU102926 lncRNA downstream 146946 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 222782 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 271669 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 336689 39216827 ~ 39217078 (+) True G82520
TU102991 lncRNA downstream 339781 39219919 ~ 39220207 (+) True G82521
AMCG00010687 mRNA upstream 71718 38782202 ~ 38796080 (+) False AMCG00010687
AMCG00010685 mRNA upstream 90753 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010674 mRNA upstream 183439 38679808 ~ 38684359 (+) True AMCG00010674
AMCG00010675 mRNA upstream 192058 38672224 ~ 38675740 (+) True AMCG00010675
AMCG00010684 mRNA upstream 194272 38672197 ~ 38673526 (+) True AMCG00010684
AMCG00010689 mRNA downstream 54205 38934343 ~ 38962861 (+) True AMCG00010689
AMCG00010690 mRNA downstream 98542 38978680 ~ 38983811 (+) True AMCG00010690
AMCG00010692 mRNA downstream 195527 39075665 ~ 39087253 (+) True AMCG00010692
AMCG00010693 mRNA downstream 277799 39157937 ~ 39167571 (+) True AMCG00010693
AMCG00010694 mRNA downstream 288983 39169121 ~ 39171541 (+) True AMCG00010694
TU102818 other upstream 77030 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 77030 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 77030 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 77030 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 227673 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 968808 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 1166948 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1672619 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1808379 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 2047041 40927179 ~ 40930030 (+) True G83001

Expression Profile