RNA id: TU102820


Basic Information

Item Value
RNA id TU102820
length 3930
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00010687
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38782079 ~ 38797886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcttatgtaacgTTAATTACAGCGTTTCAGGGAGAGGTCGTTATTCCCACCCAAGATGGCGGACTGATCGAGCCAAGACGGGAAGAAGAGTAACAGAGAACTATTGTGTCTATGGTAGGACGTGACGTTGGGATCTGCGTGTCTCGGCCGTGGTCCTCCTTGCCGCCAGCGGGCGCCGCAGAGGCGGCTCTGTAATGCGGTAACAACGGGGCCTGTTTTCATTCAGCCGGCgccatcaaaataaaaaacagcccGACGGCACGGCGAGGAGGTCAGGGAGCCCCAGCCCACAGGGCGCCGCAGTTAGCGAAGCCAGTtgaccgttttttttttcctttttaacgTGTCTTTTTCCAGAGCGGCGCACGATGAGCGGGATTCCCGGCACCGCCGTCATCCAGATCACCAACCTGTCCCCCGCGGTGAGCAGCGAGCAGATGCGGACGCTCTTCGGTTTTCTGGGGGACATCGAGGAACTGCGCCTCTACCCGCCGGACAATGCTCCGCTACCCTTTTCCTCCAAagtatgttatataaaatacagagagCCTTCGAGTGTTGGTGTGGCCCAGCATTTAACCAACACTGTCTTTATTGACAGAGCTCTGATAGTTGTGCCCTGTGCTGAAGGTGAGTATGCGTCACACCCGGGGCAGcgctttgttttcattaagaatttaatgtattaacacAGTATAAGTATTTTAGCAAGGAGTGTCAATCTGTCTTTAAAGGGGTGTTCAGAGCTTTAAACCTCTTCTTAAGCAGAGCCACAAGTATCTGAAATACCTGACGATGTCAATGTTCCTTTACTGTCTGTGCTTACAGTAAATCTTTATTCTCACTTATATAACTTGTTTCTCTGTTTGGCGTCACAGTCGAGGAATAAGTGCTATACAGTGGGAGTCCAGCAGGTGGTACTGTTGTATTACGATGCCTACTCTATTACCCTGACCAAAGCAGTCTCTATAAACGCACAAAAGTGCTTAGCTCTGAAATTTAAAGTCTCTTCTTATATTGACTAAACCGAGACCCTGTACTCCTTTATAATGAAGTACTGGGCAATGAAAAAACGTTTAGTAAATTGTATTCAATGCAAATTAACCagattatattaatttacactGTAGTCTTATACACTTGAGCTAAAACAGCATTTTGAAGTGCAGTTTATGATGCAAAACTGGAACATAGTTGAGCCACACCAGTCTTGCCGATAGAGCCAGAAACAGTGACGTTTTTGCGGGGTGTGAATGAAGATCATTAGTCTGTTTCATATTgcattccattttgttttggtatatTAATGTGGGATCACAGTCGCACAACACTCCTGCTCACAGCAGGGAGAGTCGTACGCTGCCATCGCAGTGCACTGTCCCTACAGGTGACTATTCATACAAATTCAAAAGAAACGCTTATCTGTCCTCTGGTCACATCCCAGTCCCCTAGTCGCTGTGGTTGTGGTGGCTCCAGTTTAGACGCTCAGAGGCCCATGGCAGGATCCATATCTCCAGTGAAGGGAGCAGCATGGCTTAGGGAGCGTCTTGAACGCATTGTGTTCCTCTGTCTTTCATTTCACACTGCTGTCAGAGCTGAGCTGTAGGTGTGAtagtggtgggggggcaggtcAGGGCAGGCAATGTTAGAAATGACTTCAGTGTGTGCTGGAGACACCCGGTATTGAACATGCAGCTAATTACgtcttctctctgtttttttcttttctttcttttttgttttgttttgtttctttttgtttcctttttgtttttttgtttctctcctggaaaagaaaacaaaaatctcgaTCTAAACGGTGGTATTTTTCTGCATtccctttttaaacatttatttttgtgaatgaTTGTCCTCGTTACCTGGCGGATGGCTTCTGAACTTATTAATTTGgtcttgtatgttttttctgtgtgattATGTGTGCATTATCAGATGACTAGACTGGCCCAGGCAGACCTGTTACAGTAGCCTGTGTAAGGCATTGTTTGCCCTGCCACTATTCCCGCTGGCAGCCGCAGACTTCATGGGGGACAATGTGACCCGGAGAATAGCCGCCGAATCCTTCCAAGATGGACACCTtgtctctttttgttttgtttttgttattttgttttttatacatttattttgtcccTTGTTTGCCTCTCATAGGACCCAAAAGCAGcaatattgcattttcatgagtgtttttttagtttgttttcctttttttgtttttgtgctctCCCACAGctgcttttccacatttttgtttgctgacTGTCTAGGTTGACATTAATTCATTTCTGTTAGGACTCTCTACTTTACATGGGCTGCAGTTTAAACTAACctgtttcctctctctttctgtttgacGCCGTTGATCCGGGTTTAACCTGTGTCTTCTCTCAAGATCTGTAGTTctactacattaaaaaaaatcataatttccaaatttgttttactttgtaatGATCATCTCAGCTGTTTGCTGAGATTTATTCTCCGGTTAAACCCTGATCTCCTTGTAGGTTTTTTTAAACTCTGGAAGAAGTCACATTGTAAAGGATTTCTtaaatgtgaatttattttggaaatgatCAGTTGGCTGATTGCATGATTGTATCATGACAATGTCACCTTGACCAGAATTAATTCGGTTACAATTGACTGTCTGAAAATTAAATCCCACTTCTTAGTCAGCGTATGATATTTCCATACTAATTCTTGAGTAGTTTTTTCTTGtctctttaattaatttccctGTTTGCAAGTGTTGATGTTCAGTCTCACAGGGAGGTggtgttggtgggggggggtgcagtgTGTGCAGGGTCTTTAGTCTGGGATCATGCATGCTTTAGGATATCCACAGCGCACACTCCGCGCCTTTCTTCAGTGGGTGTCTCCTTCTGAGAATGAACCTGAATACCTTTAATCTGCTGTCCGGGGAATTGTCACCTCTGCAGCTGGAATCCTAAAGTGTGCATCTCATTGTGTGCCTTCGAGCTgcaccagtgtgtgtgtctgcagaggaCAGGGCTCTGAGCCGGACACGGGCATCCCTGTGCTCCGGTGTTGTCCAGCGAGGTGCACGTCTCTAGTGATTGGCTCTGACTGCACAGATCAGATGTTGTCTGCATCTGAAGCCAAACTCCACAACATGACAACAAGGGGGTGGGAATGGGGtgtggggttgggggtgggtggggagCTAAATActttgttatattgttttggATATTTGCAATTCATGGGGATctaaatttttaaaaatgttcttcttttctGTATCTGATGTTCTGTGTGCTATTAGTGACGCAGCCAACACGAACGGTTGTCTTGTGTTACACAACTTTCCAACACTGCGAAACGATCGCCTGGGAAAAGCGTCCGTGCTTGATATCGTATGGTTCATGACCAATAAGTTTCCAGTACAGGTAAAATCCCGGAAGAGGCCAAAGCCTTGTCCCTTTTAGCGCCTGCCACCACAGTTGGCAGTCTGATGCCCGGTGCAGGGCTGTTGCCCATCCCCACGCCAGCGCCTCTGCCCTCAACCACCACCGCCGAGCAGCTGCTGGAATACTTCAAGCAAGTGGGAGACGTGAAGTTCGTGCGCATGGCTGGCGACGAGACGCAGCCGACGCGCTTCGCCTTCGTGGAGTTCGCCGACCAGGAGTCGGTGCCCCGAGCGCTGGCGTTCAATGGGGTCATGTTCGGAGACCGACCCTTGAAAATAAACCACTCCAACAACGCCATCGTGAAGCCGCCCGAGCTGACCCCCCAGGCCGCGGCCAAGGAGCTCGAGGACGTCATGAAGAGAGTCCGGGAAGCACAGTCCTTCATATCTGCCGCCATCGAGCCAGGTATGCCCACCCGCCACACCCTGACCCCCCTCGGGAGAGCCAGGACGGTCAAACGTTCCCGGGN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102776 lncRNA upstream 217796 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 298755 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 306971 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 357030 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 412037 38367669 ~ 38370042 (+) True AMCG00010656
TU102860 lncRNA downstream 1557 38792325 ~ 38797886 (+) False AMCG00010687
TU102926 lncRNA downstream 236316 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 312152 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 361039 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 426059 39216827 ~ 39217078 (+) True G82520
AMCG00010685 mRNA upstream 5034 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010674 mRNA upstream 97720 38679808 ~ 38684359 (+) True AMCG00010674
AMCG00010675 mRNA upstream 106339 38672224 ~ 38675740 (+) True AMCG00010675
AMCG00010684 mRNA upstream 108553 38672197 ~ 38673526 (+) True AMCG00010684
AMCG00010673 mRNA upstream 120626 38652885 ~ 38661453 (+) True AMCG00010673
AMCG00010686 mRNA downstream 77030 38867798 ~ 38880138 (+) True AMCG00010686
AMCG00010689 mRNA downstream 143575 38934343 ~ 38962861 (+) True AMCG00010689
AMCG00010690 mRNA downstream 187912 38978680 ~ 38983811 (+) True AMCG00010690
AMCG00010692 mRNA downstream 284897 39075665 ~ 39087253 (+) True AMCG00010692
AMCG00010693 mRNA downstream 367169 39157937 ~ 39167571 (+) True AMCG00010693
TU102794 other upstream 141954 38637503 ~ 38640125 (+) True AMCG00010681
TU102593 other upstream 530069 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 612548 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 893916 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1518030 37261324 ~ 37264049 (+) True G81987
TU103177 other downstream 1058178 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 1256318 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1761989 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1897749 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 2136411 40927179 ~ 40930030 (+) True G83001

Expression Profile