RNA id: TU102860


Basic Information

Item Value
RNA id TU102860
length 3030
lncRNA type sense_over
GC content 0.48
exon number 5
gene id AMCG00010687
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38782079 ~ 38797886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCGCGTATTGTCGGGGTGCTTGCAGGTCGGGTTTAGCCGTGGCgaacgagagcggggcggaacgcgcttgtgctttatttttgttgtgttttttcacacGGCCTCAATAGCGCTGCGGGACGCCCTGTACATATAAATCTGTATTCGCTTCCGTGTTTAGTGAGTCATTCAAACAAGGTAACTGTATTACTTAATTCATTCGcttccattgtttttaaaaatggttaatCTGGCGAGTGTAACATTcaagatgaaaaaaacaaacatgactgtaaaacaaacatgcaactTTATACACATCAACACAAATGATCCGATAGTAACACACCTAGACACATTTGCTCCCTCCTCTTTGGaggtgattggctgcataaaaaatgCTTGACAAGCACTTTCCTGCaatgtgattggctgcataaaaccattgattgacagttactcctcccacGTTCCAAAAACTCAAGACTCGCAATgcaagtgttttgtattttgcacagATTAATATATCGAATATCACAAACTCAatatatcgcccagccctagtgaCACGCCTGATTGGCCAGGCCTCATGATCACTTCTCCACTGTAGAAGAAATCCCTTCCCATGTTTAATGTGACTCTTTACATGTGCTATcctttatatattatgtttccTTCAATCACTCCCCCCGTGATGTGGCCAGGCAAGGGaacttgtgtgtgtctgagccGTTAACTGTGGGAGGCCTCTGAGGGTTTGCTCTCCTTGTGCCATCAGGGACAGAAGGAAAGACAAGGATGGCAAAAGCAAGAGTAAGGAGGAGAGCTCGAAAGAGAAAGACGAGCGGAGGCTGAAAGACAAGAAGGGAAAGACGCCACCAAAAAGCTACAGCTCGTCGCGGCGATCCCGGAGCACAAGCAGAAGCCATAGGAAGAGGACCAGGAGTCGGTCGAAGTCTCCCCAAAGGTCCCGAACGCCGAAAAGGAAAGTGAAATCCCCTTCTCCCAGGAGAGgtaagaaggagaagaagaaggagaaagggGGGGAGCGCGGCCGGTACCGCGGTTACGGGGAGCGCTCCACCTCGAGGAAGAAGATCGCCAAAGACCGGGAGAAACACGAGAGGATGCTTCCCCACCTGAAGGTGGAGCGCGACTACGACCGGGAGGAGCGCGACTGTGAGAGGGACCAGGGCGGCGCCGCGCCGATCCAGCACAACGGCAGCTACAGCAAGCACGACGACGAGCTCTCGGCAAAACCCGGCGCGGCGGAGTGACGTGGCACAGGCTGAAGCCGGGCGAGGCTGGGATCTGGGTCTGAGGGTGCTGGTTCGAAAGGCAAGACATGCAATCGGAGACCGGGCGAGGAGCGGGGCGCCTCCCGCACTGCGGACGTGTCCGTCGGAGACGCCGAGGCGTCCGAGGCCAAGGCGCTCCGGAAATCAATGGTCTTTAACgttgtctgtgttttgtataactgagttttttttgttttgttttttaaagaaggaaaCCTTTGCATTTGTTCGTGCTGTGAGACGTGTGTCCTATGATATTCATATGGAAGATGCACAAACAAAccgatttgttttaattttgttgatgagtaaaatatgtaaaacctAATTTCTGTAAAAATCACCTTATCTGACGTCTATTTAACAGTGTACACTTTAGAGTTGCGTGTTCCTGCTAGTGAGGTTTGTACTACAACTTTTTTTATTCcttataatttaattgtgtCTGTCGGCTTATGAAGCTAGCCTGTAGTTCCCGCCTCAGACTTGCTGAGAGGAAGACGCCAGAGTGGAAACGACAGGAACGCGTAAACCGGCTTCGGGGCGCGCGGCTCTTCGCGTGACTTCCTGGCCGCGGTCGTGTGGAGTTGCCCCGTGGCGTTCGTGGGGGACGGGAGCGCCGGCCGGTTCGCTGCCCACAGAGAACGAGAAAAGTGCCTCGACTCGGATTGTAGCGAAAGTCTAGATGTGTCATCGTAAACAGGGTAAACGATGGTAAGGAGTGAAATGGGGGGAAGAAAAGCCAAGACTGACACCCTACATCCACAGTTGAATCCTCCTCCGCTGATCTTGCCGTGCCGCTGAGGTTCTCGATGGTTTTAGATTCCCAGCGGCTCCGAATGTGCAGTAAACTGACCGGCACGGTTCAGGGCATTGCGGACTTCCCTTCCAGCTCCATCTCTCGGTCTCGGGCACAATCCAGAGCGATCCATGAAGACGAAATAATTTTTCATCTTCAATATATGAAGTGTATATTTCAGGAGAAAAGGCTGCATCAATTCAATCAGgactttcaagaaaaaaaaattgttctgtttaaaaCCACCACCGCGGTTTTGTACCGAAAATAAGAGGTTTTAGTATCCCGTTTGCTTTGCCTTTCCCCATCTGACAGACCCACCACTCGGTCAGCCGCGCCGCTGCGCTCCTTTTCGAGGAGCTCGtggtttttctttatttaaatctcaTTCGGTTCCCCAGCGGTCTGGCGTCGGTGCTCAGAGGGGGAAACGAGGGAGTGTGTCGGTCCCGGTGGCGGTGGAGTGAGACTGGCGTGTGAGGGGCATGGGGGCGGAGGCGAGACTCGTGGATCCCTGCTCACTCCTTGGCCCCCCAATATCccttttaagattttatttttatatatattttaaaaacaaatgtcagtttGTATAATCGGCTGGTTTTTGGCTTGTGTTCGTATCTTCATACATAATGACATTATGTAGACATTGAGAGAATCTGTACTTTAATATATGAAGTGGAAAGAAACAACATTTCTAACCTGTTGAATTTGAGAGACTTTGTCCTTATGttactgctttttgtttttttgtagtaaATAAATTGAGattttagttgtgtgtgtgtgctccacttcttcacatttttttttttttgtacgaGTCTATATCTCTAAATGGGAGCAGTGCTGaattcatgtaaatatattacagaaGCATTGGTGCCCGTCTGAAACGCTGGGCTGTCCTTTCTAAGATCATGAAACACAATAAAGGCTGCAGACCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102776 lncRNA upstream 228042 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 309001 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 317217 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 367276 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 422283 38367669 ~ 38370042 (+) True AMCG00010656
TU102926 lncRNA downstream 229198 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 305034 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 353921 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 418941 39216827 ~ 39217078 (+) True G82520
TU102991 lncRNA downstream 422033 39219919 ~ 39220207 (+) True G82521
AMCG00010685 mRNA upstream 15280 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010674 mRNA upstream 107966 38679808 ~ 38684359 (+) True AMCG00010674
AMCG00010675 mRNA upstream 116585 38672224 ~ 38675740 (+) True AMCG00010675
AMCG00010684 mRNA upstream 118799 38672197 ~ 38673526 (+) True AMCG00010684
AMCG00010673 mRNA upstream 130872 38652885 ~ 38661453 (+) True AMCG00010673
AMCG00010686 mRNA downstream 69912 38867798 ~ 38880138 (+) True AMCG00010686
AMCG00010689 mRNA downstream 136457 38934343 ~ 38962861 (+) True AMCG00010689
AMCG00010690 mRNA downstream 180794 38978680 ~ 38983811 (+) True AMCG00010690
AMCG00010692 mRNA downstream 277779 39075665 ~ 39087253 (+) True AMCG00010692
AMCG00010693 mRNA downstream 360051 39157937 ~ 39167571 (+) True AMCG00010693
TU102818 other upstream 1557 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 1557 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 1557 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 1557 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 152200 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 1051060 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 1249200 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1754871 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1890631 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 2129293 40927179 ~ 40930030 (+) True G83001

Expression Profile