RNA id: AMCG00010690


Basic Information

Item Value
RNA id AMCG00010690
length 2628
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00010690
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38978680 ~ 38983811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCCTTCAAAGCTGAGGGAAGAAGAGCAGATGGTTTCAGTGCCTCTGtgcggcccggcccggcccggcccgcaGTCCTGGGCAGAGATCCAACAATGCGCTCCAGCGAGCCGCTGCGCCAGAGACCTCGTTCTCCTGAGCATAATTACTTTCTCATGCACTGTGTGGAAATGCATTACCCGGGgacAGGCCTTTGTAACTGGATTGCATTTAAATCGGGGCGAACTGAATCTCTGGAGATGTCGGCCACCACCCACTGGAAAAAGACTTTGTGATCAAACTGGTGTGAACGGGGATTCGTGAGTGACGGGTCTGGCAAGAGGAGGACCTCTAATGTGGACGGGATGTGAGCTGAGGTGATCAATTAACAATCCCAAAGAGttataacagcaacaacaacagcataaTAATGGAAAGAACACTGAATTCTGAAAAGGTTCTGTACAGAGTGTTGAAGCCCAGTCTGATCTCTAGTTATTCCTCATGGTTCGCAATAGGTTGAACTTCATCTGGGTTAAGAGGTGAACTGCAGCTCCACAGGACTTCGTACATCAACTCCACAGCTTCTACCCTCCCCCCCCCAGCTTCAATTTGTCTCCATAGCTAACAACGGTAGCCCAGGAACAAACTGCTGGAAGAAAactgtgcaataaaataaaatgtgtgcctCTCTAATCATCACATtcgaaacataaataaataaatcccgtACTCTGTACCGACCCAGTGTGGCAGGAGTGGGGAGAGCAAGTCCTCCGGGGCCGGGCTCCTCCAGGGTTTATAGGTTCCGTTCAATTAGCAACTGATTAAGATcgtgaataaataataatgaatccaattaagtaattaagacccactggaatgaaaaccagaaataCCTTTGTCCCTAGAGGACTGGAGTGGCCTCCCCCTGCAATACAGCACTGTTGTGCTGAGAGGCCCTGGTATGAATagtataaaataagcaaaatatttcaacatTAGCCCGACAGCACTGGCTGACAAATATCCTTTTGtaaagatacaaatattttacaacaaaaaaagatgcaCACTATGTATATGTTGTCTCCTCACAAATGATCGACAAATGATCTTTTCTCCCCTGATGAGGAGAAATGAGACAAATCAAACGTAATCTTGGTGACCTTCAGTGTTGTCAGAATGTAGTGCATTGAAACACATGCTCTCACGCTGTATGTAGTGAATTGAAACACCAGTTCTGACATGCGGTTTTCATGCTCTGGGGCAAAACATACAACTGCAAACTGTGGATACAGTTCATACAGACCTAGTGAAGCTCTCTTGAAATCTGAACAGGATATTCACAAGCCACTCTGTAAACATACCTCCCTGGGACGTCCAAGCATACTCAGAATTATCAAACTAAACATGTGGCTTTTCTACCGAGGTCGCTGAACTCTGCGAAGTTACATAACACTGGGTACGATCATTTCAAAGAGCGTGCTGTATCAAAGCAGGTTCATCAGAGAAGGGgagtaaaataacacacaaaagcGACAGCTGCTAAATGTACACAAAGACTTCTTGATTGAGTGTACAGTGTGACGTTATATAACCTCAACCGAGAGTCTCAACTAGTGGAAGCACCTGGACACGTGACGTATCGGACTGAGGACAAAAGTGTGAATTCACATGAAAGTAATCATCTCAAAGGTAAACGTAAgaggttttgtttctgcttaGATTTTTCTGCAAACGTTTCTTAAAATATCCCCAatttttgtaatgcaaatgGGACCGGAGGCTTTCTATCACAAATTGACAGCCGTGCTTCACCCCTTAACGTTTGCCAAATCTACAGTAATGACCTCAGAGTACATCGAtgctgtttgtcttttaaagcTCCACATGTGTGAAATTCTGCTCCTCTGAGGGTTTGAGATTGTGTGTCTGGAACttcaaaaagacaacaacaaaccAACAGCACTTCAGAGATGATCTATTTATTTCCAGTTTGGTTCTGTTACTGGTGCAGTACTTAATATGTAATCCCTTTCCGACTCTCACAACTCGGGTGCGATTGATGTGATGTCACCGCAGTTCATCACTAAACCCAGATGGCCTGGACTTTTGCAGGAGCTTTACTGTGCAGATGATTGACAGCGCAGGTCTTTCTAATGCCTGAGCCAGAAGGAAGACTTACTTGCCGGATACACAAAGCTCTGGGATTGGATGGCAGCTCAGTGGGAAGGGATTATGTGGTCCGATGACTGTGTTTTGCAGTACTTTGCACTGACAGCAGGGTGAAAGTGTGGTGCCAGATTCCCTTCTGCACCTTAAAAGCAAGTTGCTGTGAAGCTATGTCTTCCTTAAAAGTtataagttaaaataaatgacttgcATCGAATATAAGTTACAAATTGAACTATTTTGAAGACCATCAAGACTTTTCTTCTTGCTCCGCTCAGCTGCTGTGAGTGACTTCATATTGACAATGGATCAGAACTAAAGAAGCAGAGAATGGGCCACCGCTGGGCCCAGACAGCGCAGGCGAGGTCCCGAAACAGAGCCACACTGAGACCCCGTCCACAGGAGCCACATAATAATGTGTTATGGGACTCTGGGAGGCTGGGGAGATGGAGTCGAGGTGTATTTTTAGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102860 lncRNA upstream 180794 38792325 ~ 38797886 (+) False AMCG00010687
TU102776 lncRNA upstream 414397 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 495356 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 503572 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 553631 38423480 ~ 38425049 (+) True G82285
TU102926 lncRNA downstream 43273 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 119109 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 167996 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 233016 39216827 ~ 39217078 (+) True G82520
TU102991 lncRNA downstream 236108 39219919 ~ 39220207 (+) True G82521
AMCG00010689 mRNA upstream 15819 38934343 ~ 38962861 (+) True AMCG00010689
AMCG00010686 mRNA upstream 98542 38867798 ~ 38880138 (+) True AMCG00010686
AMCG00010687 mRNA upstream 182600 38782202 ~ 38796080 (+) False AMCG00010687
AMCG00010685 mRNA upstream 201635 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010674 mRNA upstream 294321 38679808 ~ 38684359 (+) True AMCG00010674
AMCG00010692 mRNA downstream 91854 39075665 ~ 39087253 (+) True AMCG00010692
AMCG00010693 mRNA downstream 174126 39157937 ~ 39167571 (+) True AMCG00010693
AMCG00010694 mRNA downstream 185310 39169121 ~ 39171541 (+) True AMCG00010694
AMCG00010695 mRNA downstream 260044 39243855 ~ 39248567 (+) False AMCG00010695
AMCG00010696 mRNA downstream 329294 39313105 ~ 39333836 (+) True AMCG00010696
TU102818 other upstream 187912 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 187912 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 187912 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 187912 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 338555 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 865135 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 1063275 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1568946 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1704706 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1943368 40927179 ~ 40930030 (+) True G83001

Expression Profile