RNA id: AMCG00010692


Basic Information

Item Value
RNA id AMCG00010692
length 1890
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00010692
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39075665 ~ 39087253 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAAATCGATTCGAGCCATCTAAAGAAGGAACGCGAGGTTCATCCTTGCTGGACTTGACAGAACAGTTCTTTGCATCAGAGACCGCCCCCCCCATCCTGGTGAAACTGGTGGAGGCCATTGAAAGAAAAGGTCTGGACTGTCCCACCCTGTACAGAAGTTTTGCATCGACTAGTGGACACGACATCCGGCAGTATTTAGAAAGTGATACTACTTCACAGGACTTGGACCAGTTTGACCTCCAGACCCTGTCCGAGGCCTTGAAAAAGTACCTGCAGGACCTCCCCCACCCTGTCATCCCCTCTGGGGTTTATGGGGAGCTGGTTCATGTAGCTCAAGaggtGCCGAACCCGGATGAGTGTGGGCAGCTGCTGAGGAGGATCGTCCGCTCACCCAACGTCCCTCACCAGTACTGGCTCACGCTCCACTACCTGATCAAGCATTTCTGCAGAGTCTCTCAAAACACAGGCAAAAACCTGCTGAGTGCCCGGGCCCTGGGCGAGATCTTCAGCCCTCTGCTCTTCAGACACCAGGCGGCCAGCTGCGATTCGAACCCAGAATACCACATCCGGATCATTGAGGTCTTCGTCATCAGCGAATGGAATGACAGCCAGGCTGCCCCAGCACTGCCTCCAAAACCACCGAAGCCTGCTCCAATCGCAAATAACGGCATGAATAACAATATGTCTCTGCAAGACGCCGAGTGGTACTGGGGAGATATCTCGAGGGAGGAAGTGAATGAGAAGCTGAGAGACACGCCAGATGGTACGTTCCTGGTCCGCGATGCCTCCACGAAAATGCACGGCGACTACACCCTCACGCTGAGGAAAGGCGGCAACAACAAGCTCATCAAGATCTTCCACCGAGACGGGAAGTACGGTTTCTCGGACCCACTGACTTTCATCTCCGTGGTCGAGCTCATAAACCACTACCGCCACGAGTCGCTGGCCCAGTACAATCCCAAACTCGATGTGAAGCTGCTGTACCCCGTGTCCAAACACCAGCAGgaccaggtggTGAAAGAGGACAACATCGAGGCCGTGGGGAAGAAACTCCATGAGTATCACCTGCAGTACcaggagaaaaacaaggaaTACGACCGGCTCTATGAGGAATACACGAGGACCTCGCAAGAGATCCAGATGAAAAGGACCGCCATCGAAGCTTTCAACGAAACCATCAAGATTTTCGAAGAGCAGTGCCAAACGCAGGAGAGGTACAGCAAAGAGTACATTGAGAAGTTCAGAAGGGAGGGGAATGAGAAGGAAATTCAGAGGATCATGGTGAACTACGAGAAGCTGAAGTCGCGCATCAGCGAGATTGTGGACAGCAAGCGCCGCCTGGAGGAGGACCTGAAGAAGCAGGCGGCCGACTACAGGGAGATCGACAAGAGGATGAACAGCATCAAGCCTGACCTAATCCAGCTCAGAAAGACCCGAGACCAATACCTGATGTGGCTGACTCAGAAGGGTGTGCGGCAGAAGAAGCTGAACGAGTGGCTGGGAATCAAGAACGAAAACACAGAAGACCAATACTCTATGGTGGAGGATGACGAGGACCTGCCCCACCATGACGAGCGCTCCTGGAAGCTGGGCAACATCAACCGGCCTCAGGCGGAAGGGTTGCTGCGGGGGAAACGGGACGGCACATTCCTGGTCCGGGACAGCAGCAAGCAAGGGTGCTATGCCTGTAGTGTTGTTGTCGAGGGCGAGGTGAAACACTGCGTCATCAACAAGACGCCCACGGGCTTTGGTTTTGCGGAGCCCTACAACCTGTATGCCTCACTGAAGGAGCTGGTCCTGCACTACCAGCACACGTCGCTCGTGCAGCACAACGACTCCCTGAACGTCACGCTGGCGTACCCAGTGTACGCGCACCAGCGGCGTTGA

Function

GO:

id name namespace
GO:0043551 regulation of phosphatidylinositol 3-kinase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035014 phosphatidylinositol 3-kinase regulator activity molecular_function

KEGG:

id description
K02649 PIK3R1_2_3; phosphoinositide-3-kinase regulatory subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102926 lncRNA upstream 48247 39027084 ~ 39027418 (+) True G82468
TU102860 lncRNA upstream 277779 38792325 ~ 38797886 (+) False AMCG00010687
TU102776 lncRNA upstream 511382 38558466 ~ 38564283 (+) True G82353
TU102752 lncRNA upstream 592341 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 600557 38474850 ~ 38475108 (+) True G82338
TU102954 lncRNA downstream 15667 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 64554 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 129574 39216827 ~ 39217078 (+) True G82520
TU102991 lncRNA downstream 132666 39219919 ~ 39220207 (+) True G82521
TU102993 lncRNA downstream 148572 39235825 ~ 39238488 (+) True G82523
AMCG00010690 mRNA upstream 91854 38978680 ~ 38983811 (+) True AMCG00010690
AMCG00010689 mRNA upstream 112804 38934343 ~ 38962861 (+) True AMCG00010689
AMCG00010686 mRNA upstream 195527 38867798 ~ 38880138 (+) True AMCG00010686
AMCG00010687 mRNA upstream 279585 38782202 ~ 38796080 (+) False AMCG00010687
AMCG00010685 mRNA upstream 298620 38738449 ~ 38777045 (+) True AMCG00010685
AMCG00010693 mRNA downstream 70684 39157937 ~ 39167571 (+) True AMCG00010693
AMCG00010694 mRNA downstream 81868 39169121 ~ 39171541 (+) True AMCG00010694
AMCG00010695 mRNA downstream 156602 39243855 ~ 39248567 (+) False AMCG00010695
AMCG00010696 mRNA downstream 225852 39313105 ~ 39333836 (+) True AMCG00010696
AMCG00010705 mRNA downstream 325263 39412516 ~ 39435225 (+) True AMCG00010705
TU102818 other upstream 284897 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 284897 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 284897 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 284897 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 435540 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 761693 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 959833 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1465504 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1601264 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1839926 40927179 ~ 40930030 (+) True G83001

Expression Profile