RNA id: AMCG00010693


Basic Information

Item Value
RNA id AMCG00010693
length 3696
RNA type mRNA
GC content 0.54
exon number 15
gene id AMCG00010693
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39157937 ~ 39167571 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCTGCTTGTGTCGTTGTGGCCGGTAGAGGCCGCTGCAGCTGCGCCGTGAACCTGCCTTTGCACCGGGAGGCAGGAATACGGGTTCCTGGAcgactttaaaattaaattaaataaagacgaGCTTAAGGATGTTAAATATAAACACGTTATTATTGACTCGAGCGACTGAATAACCGATTTTGGTGCGTATTATCGAGGTCGATGCAGGCGGTTTCACTTTTACGTTAAAAACTGCAGTTTGACGTGGCTTAGTGCCGGCGCGCCGCGGTGCAGGAGCGACCCGACACCATTTTCCGGCCGCCTCCAGATGACTCCCGAGCGGCCGGCTCATCTACTGCGGCCCCCGGCTGCGGGCCTACCGGTCGGACCTTAGGCGGCTAAGTGCGATCGTTTTAGTTTGTAACAACGAAACAAGATCATGTGTACACTGTGCTGATAAGGACCCAAAAGTGCACTTTCGTAAAAGTATTACGGTAGTTTACTAGTTCATTACATGATGAGACGTCACTcatgtgaagtgtttttttattcgCTTTAACCTATTATTTAttcaacttaaaaaacaaaccaacagtaTCATTATGGATGACAAATACAGCAGCAATGTGATTTCCAGTGGCCAGCTGGGACCGGTGGAGGTGCCCAATGCGAGGCTTACCAGGTACATCGTGTTACTGTGCGTCACCAAGGTGTTGAAGGCGCTGGGCATGTTTGAGTCCTACGACCTCCTTAAAGTCGTCCACATCGTGCAGTTCATCTTCATTCTGAAACTGGGATCTGCCCTGTTCCTGGTCTTCTTCCAGAAGCCGTTTTCAGCCGGAAAGACCATTTCAAAGCGACAGTGGATCAAAATCCTAAAACACGCAGTCGTCGGCTGTATTATTTCACTCCTGGGCTTTTTCGGTCTCACACTCTGTGGACCTTTAAGAACCCTGCTGCTCTTCGAACACAGCGATATCGTGATCGTCTCTCTGCTCAGCGTCCTCTTCACCAGCTCTGGAGGTGGACCATCCAAGACCAGAGGGGCGGCTTTCTTCGTCATCGCAGTGATCTGTTTGCTGCTCTTCGACAACGACGACCTCATGGCCAAGATGGCGGAGCACCCTGAGGGACACCACGACAGCGCACTGACGCACGCTCTCTACACGGCCATCGCGTTCCTGGGCGTCGCGGATCACAAGGGTGGCGTCGTGCTGCTGGTGATCTCCTTGTTCTTCATGGTGGGCTTCCACACGGCCTCCAGGAAGCTGTCTGTGGAGATCGGGGGGGCCAAGCGCCTGTACTGTCTGTCGAACCTGGTCTCGGCCGCCGTCCTGCTGCCCTGGGTCATCGTGCTGTCGGCCACCACCGAGGTGAGCGGTTGTTACGAGCTTGAGTGTCGGGACTTGGACTGTTCCATCAGCACGGCGGGGGGGTGTTGGAAGAGAACTATAACCCATCGCCGAAGGAGGTTTGGTCAGAGAAAAGTGAGCCGTTCACTTCTCTGGCTAGAACACTCTCGGTATGAGGGAGACCGAACCCCAAACCCCTGTCTTCTCACGTCTGTCTCCATTGCTTCCGTCCAGAGCAAAGTGGAGTCCTGGTCGGCGCTTGTCCTGCCCTTTGCGATGGTCGTGTTCTCCGTCATGATCCTGGACTTCTACGTGGATTCCATCTGCATCGCCAAGATGGAGGCCCCCAAGTGCGCCCGCTACGGCTCGCTCTTCCTGGTCTCCAGCGGCCTGCTGCTGGCCAACTTCTGGACGCACCCCTTCACAGACACGCTGCGCTCCGTCGGCACGGCGGCCCTGCAGGACGGCACCGAGCACGTGCTCTCGGGGGGCGTGGTGGTCAGCGCCCTGTTCTTCATCTTGTCTGCCAATATTTTGTCATCCCCCTCCAAGAAGGGGCAGAAAGGCACGCTGGTGGGCTACTCTCCCGAGGGGACACCGCTCTACAACTTCATGGGTGACGCCCTGCAGCACACATCGCACTCGCTCCCCCGCTTCATCAAGGACTCTCTGAAGCAGATCCTCGAGGAGTACGACTCCAGGCAGATCTTCTACTTCCTCTGTCTGAACCTGGCATTCACCTTCGTGGAGCTGTTCTACGGCGTCTGGACCAACAGCTTGGGCCTCATCTCGGACGGCTTCCACATGCTGTTCGACTGCTCCGCCCTGGTCCTCGGCCTCTTCGCCGCCCTGATGACCAGGTGGAAAGCGACGCGCATCTTCTCCTATGGGTACGGCCGGGTTGAGATCCTCTCCGGGTTCATCAACGGCCTGTTCCTCATGGTCATCGCCTTCTTCGTCTTTGTGGAATCGATCACGCGGCTCGTAGACCCTCCCAACATCAACACGGACATGTTGACTCCGGTGTCCGTCGGGGGTCTCATCGTGAATCTGATTGGCATCTGCGCCTTCAGCCACGCCCACGCGCACGGAGCGGCCAAGGGGAACTGCTCCTCCAACGACCACGGCCACTCCCACCACGGGCATGGCCACGGGGACCACGGGCACGGACACGGACACGGGGGACACGGACACGCACACGGGAGCCACGGGCACGGCCACTCGCACGGCACTGGGGGAGGCATGAACGCCAACATGAGGGGCGTCTTCCTGCACGTCCTGGCCGACACGCTGGGCAGCGTGGGCGTCATCATCTCCACGGTGCTGATCCGCCAGTTCGGGTGGCTGATCGCCGACCCCATCTGCTCACTCTTCATCGCCGTGCTGATCTTCCTCAGTGTCATCACCCTGCTGAAGGACGCCTGCGAGGTGCTGCTGCTGAGGATCCCCCCCGAGCACGAGAAGGAGCTCAGCCATGCCCTGGAGAAGCTGATGTCTGATGTTGTGGAGCAGAGAATCATCCAGCAGGTGACCGCTGTGCTGAAAGACGCCGGAGTCAACAACCTGTCCGTGCAGGTGGAGAAGGAGGCCTACTTCCAGCACATGTCCGGCCTCAGCTCAGGTTTCCAGGAGGTTCTCGCCATGACGAAGCAAATGGAGTCCATCAAGTACCTGAAGGACGGGACGTGTATCATGTGAGCCGGACACTACAGGACCAAATCGAATGGCACGACTCGTGTGatgaaaactgaagaaaaagtgGATTTGGGGAAAGTGTTTATAACGTGGTCTGTGTCTTATTTTTgcacacaatgtacagtaatataatatatgcaaaTGATGACATAGCGTCTAGGAACCTTCTGTCTCCAAACGGGATATTATATTCCATGGTTAGAAATGGGTGATATCAGAGATCTGTACATCAGTCCATGCATTAAATCGTGATTGATTGCTGCTGTTGCattaaagttgtttttcattataGCGCCTGTGTTTCTACACACCTTTCTGAGAAATCGGCCTTGATCTTCTTACCCAGTTTATTGTCTGTTTTAAGAAGTTCCCGacagaatgtgtttatttccacTAAAACCAGATCAAGCAGTATTCTGTAGTAACAGTCGAGAAACCCGATCCTCTCCGGGCCGGAGGAGGGGCTGAAAATGAGACCGTTTTCCCAGAAGGAAGAGTATTGTGAAGCTGCTTTATGTGACTGGTTTGTTCCAGACTCCCATAATCCTCTGTGTCAGGAAGTGAGTCCTGTTTATAAAGATGCACATCAGTCACTCTGCCTTTTATGAGAGTACCAcaacccattaaaaaaaaaaacgcattacatacagtacaaataaaCTGCGGT

Function

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0010043 response to zinc ion biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14692 SLC30A5_7, ZNT5_7, MTP, MSC2; solute carrier family 30 (zinc transporter), member 5/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102961 lncRNA upstream 5784 39151807 ~ 39152153 (+) True G82495
TU102954 lncRNA upstream 54671 39102920 ~ 39103266 (+) True G82488
TU102926 lncRNA upstream 130519 39027084 ~ 39027418 (+) True G82468
TU102860 lncRNA upstream 360051 38792325 ~ 38797886 (+) False AMCG00010687
TU102776 lncRNA upstream 593654 38558466 ~ 38564283 (+) True G82353
TU102990 lncRNA downstream 49256 39216827 ~ 39217078 (+) True G82520
TU102991 lncRNA downstream 52348 39219919 ~ 39220207 (+) True G82521
TU102993 lncRNA downstream 68254 39235825 ~ 39238488 (+) True G82523
TU102992 lncRNA downstream 75286 39242857 ~ 39248625 (+) True AMCG00010695
TU103017 lncRNA downstream 139358 39306929 ~ 39307154 (+) True G82545
AMCG00010692 mRNA upstream 70684 39075665 ~ 39087253 (+) True AMCG00010692
AMCG00010690 mRNA upstream 174126 38978680 ~ 38983811 (+) True AMCG00010690
AMCG00010689 mRNA upstream 195076 38934343 ~ 38962861 (+) True AMCG00010689
AMCG00010686 mRNA upstream 277799 38867798 ~ 38880138 (+) True AMCG00010686
AMCG00010687 mRNA upstream 361857 38782202 ~ 38796080 (+) False AMCG00010687
AMCG00010694 mRNA downstream 1550 39169121 ~ 39171541 (+) True AMCG00010694
AMCG00010695 mRNA downstream 76284 39243855 ~ 39248567 (+) False AMCG00010695
AMCG00010696 mRNA downstream 145534 39313105 ~ 39333836 (+) True AMCG00010696
AMCG00010705 mRNA downstream 244945 39412516 ~ 39435225 (+) True AMCG00010705
AMCG00010706 mRNA downstream 268467 39436038 ~ 39444075 (+) True AMCG00010706
TU102818 other upstream 367169 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 367169 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 367169 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 367169 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 517812 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 681375 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 879515 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1385186 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1520946 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1759608 40927179 ~ 40930030 (+) True G83001

Expression Profile