RNA id: AMCG00010700


Basic Information

Item Value
RNA id AMCG00010700
length 933
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00010700
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39456337 ~ 39463494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTTACTGTACAAAGTGTTGCACGACCCCCTGACCCCCGTCTGTTTGTCTTGCAGTCTGATCGAGCGTGGGCAGCTGGAGATCGCCACTGGCGGCTGGGTCATGTCGGACGAGGCCAGCGCGCACTACTTTGCCGTGATTGACCAGCTGTTGGAAGGACACCAGTGGCTAGAGAAGAATCTGGGGGTGAAGCCCAAGACGGGCTGGGCCGTGGATCCCTTCGGACACTCCTCCACCATGGCCTACATCCTGAAGCGCGCCGGCTTCACCAACATGTTAATCCAGAGGATCCACTACTCGGTGAAGAAGCATTTCGCCACGGAGAAGAACCTCGAGTTCTTCTGGCGACAGAACTGGGACCCGGACTCAAGCACCGACATCCTCTGTCACATGATGCCCTTCTACAGCTACGACGTGCCCCACACCTGCGGCCCAGACCCCAAGATCTGCTGCCAATTTGACTTCAAGAGGCTCCCGGGAGGCAGGATCAGCTGTCCCTGGAGGGTCCCGCCCGAGGTCATCAATGACGGGAACGTCCAGCACAGGGCTCAGATGCTGCTGGACCAGTACAGGAAGAAGTCCCAGCTCTTCCGCACCAAGGTGGTGCTCGCCCCCCTGGGGGACGACTTCCGCTACACCGAGGCGTCCGAGTGGGACCAGCAGTTCAACAACTACCAGAAGCTCTTTGACTACATGAACTCGCACCCCGAGCTGCATGTCAAGGCCCAGTTTGGCACCATCTCGGATTACTTCGACGCCCTCCACAAAGCCGCCGGTATCGACCAGAAGCACGGCACTCCCTCGTTACTCCCCGTGGTCAGTGGGGACTTCTTCACCTACGCGGACCGGGACGATCACTACTGGAGCGGATACTTCACTTCCCGCCCTTTCTACAAGTGGCTGGACCGGGCGCTGGAGTCGCACCTGAGGTAG

Function

GO:

id name namespace
GO:0006013 mannose metabolic process biological_process
GO:0004559 alpha-mannosidase activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103022 lncRNA upstream 82274 39371698 ~ 39374063 (+) True G82548
TU103017 lncRNA upstream 149183 39306929 ~ 39307154 (+) True G82545
TU102992 lncRNA upstream 207712 39242857 ~ 39248625 (+) True AMCG00010695
TU102993 lncRNA upstream 217849 39235825 ~ 39238488 (+) True G82523
TU102991 lncRNA upstream 236130 39219919 ~ 39220207 (+) True G82521
TU103043 lncRNA downstream 42989 39506483 ~ 39509252 (+) True G82561
TU103121 lncRNA downstream 83047 39546541 ~ 39546879 (+) True G82620
TU103138 lncRNA downstream 214979 39678473 ~ 39695118 (+) True G82637
TU103139 lncRNA downstream 234059 39697553 ~ 39697774 (+) True G82638
TU103140 lncRNA downstream 235667 39699161 ~ 39699367 (+) True G82639
AMCG00010706 mRNA upstream 12262 39436038 ~ 39444075 (+) True AMCG00010706
AMCG00010705 mRNA upstream 21112 39412516 ~ 39435225 (+) True AMCG00010705
AMCG00010696 mRNA upstream 122501 39313105 ~ 39333836 (+) True AMCG00010696
AMCG00010695 mRNA upstream 207770 39243855 ~ 39248567 (+) False AMCG00010695
AMCG00010694 mRNA upstream 284796 39169121 ~ 39171541 (+) True AMCG00010694
AMCG00010702 mRNA downstream 15783 39479277 ~ 39488974 (+) True AMCG00010702
AMCG00010701 mRNA downstream 35507 39499001 ~ 39505758 (+) True AMCG00010701
AMCG00010703 mRNA downstream 86028 39549522 ~ 39558213 (+) True AMCG00010703
AMCG00010707 mRNA downstream 112110 39575604 ~ 39593245 (+) True AMCG00010707
AMCG00010708 mRNA downstream 151642 39615136 ~ 39655340 (+) True AMCG00010708
TU102818 other upstream 665569 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 665569 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 665569 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 665569 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 816212 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 385452 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 583592 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1089263 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1225023 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1463685 40927179 ~ 40930030 (+) True G83001

Expression Profile