RNA id: AMCG00010748


Basic Information

Item Value
RNA id AMCG00010748
length 9966
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00010748
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 40861675 ~ 40876578 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTCAGCCTGATTTTGCTCTTTCTCTGCTGTTCCAGGTCAGAAGATCCTTCACCACAAGAGTAATGTTCTGGAGACAGTGGTTCTCATCAACCCCTCGGACGAGGCTGTCAGCACTGAGGTTCGTCTGATGATTACTGACACCGCGAGACACAAGCTGCTGGTTCTGTCGGGGCAATGCTTTGAAAACACAGGAGAGCTCATTCTTCAGTCAGGATCTTTCTCTTTTCTGAACTTCATAGACATCTTTACCGATCAGGAGATTGGTGAACTGCTCAGCACCATTCATCCCGCCAACAAAGCCAGTCTCACGCTGTTCTGCCCAGAGGAAGGGGACTGGAAGAACTCAAACCTGGATAAACATAACCTTCAAGACTTCATCAACATGAAGCTGAACTCAGCCTTAATCCTGCCTGAAATGGAAGGCCTTTCGGAGTTCACAGAGTACCTGTCTGAGTCGGTGGAAATCTCATCTCCGTTTGACATGCTGGAGCCTCCAACATCAGGAGGGTTTCTCAAGCTCTCCAAGCCTTGCTGCTACATATTCCCAGGTGGCCGAGGAGACTCCGCCTTGTTTGCCGTTAATGGGTTCAACATGCTCATCAACGGTGGTTCGGATCGCAAGTCCTGTTTTTGGAAACTAGTCCGACATTTGGACAGAGTGGACTCCATCCTCCTGACGCACATTGGAGATGACAACCTGCCTGGGATCAACAGCATGCTTCAGAGAAAAATATCAGAACTGGAAGAAGAACAATCCCAGGGCTCCACTACTAACAGTGACTGGATGAAAAACCTCATCTCTCCCGACCTGGGAGTTGTATTTCTGAATGTCCCAGAAAACCTTAAAAACCCAGAGCCTAATTATAGGGTGAGAAGAAGCATTGAGGAGGCCTCTCTTACACTGCAATACTTGAACAAACTGTCATTGAGACCAGAGCCTCTGAACCGAAGTATTGGCAATGCGATAGATCCCATAATACTGTTCCAGAAAATGGGAGTCGGAAGGCTAGAGATGTATGTCCTGAACCCGGTGAAGAACAGTAAGGAACTGCAGTATTTCATGACACAATGGACTGGCAGCGAGAAAGACAAAGCTACTGTGTTGCTTCCAAATGGTAAAGAATCTGAGGTCCCGGTATCCTATTTAACCTCCATTTCCTCATTGATAGTGTGGCATCCAGCTAACCCATCTGAGAAGATAGTGCGTGTTCTGTTTCCAGGCAATGCTTCTCAACACAATATCCTGGAAGGTCTGGAAAAGCTTAAACATCTGGACTTCCTTAAACAGCCAGTGGTTACCCAGAAAGAGTTATCTGCAAACTTTGCACCTGGGCTGAAGCAAGCTAAGTTGAAGCATAAGACTGACAGCAAGGAGAGTCTAAAGTCAATCTCAAGGCCATCATCCAGCAAGGGAATGAGGAAAGAATCGAAGGAAGAAGCTGCTGAGACTGCAAAAGCAGAGCCAGAGGTGGCCCCAGAAAAGACTCCAAAAATTGAGAAGAAGGAAAAACCtcttttgaaaaaggaaaaaccgAAGTCACAAGCCACACCAAAAGAAGTCAAAGCAAAACCAGAGCAAACACTCAAACCGGAAGTATCAGAGAAGCAGAAAACTGATATTAAACCAAAATCGATAAAAGAAAAGGTAGTTAAAAAGGAGGTAAAGAAATCTGatgagaagaaaaaggaagaaaaagaagcaaaGAAGGAAGCTGTTAAGAAAGATGAGACACCAGCTGctaagaaagaagaaaaggttAAAAAGGAAGAGAAGGTGAAAAAAGAAGAGGTGAAGAAAGAGTTGAAAAAGGAAACCAGGAAAGATGTGAAAAGGGATGTGAGAAAGGATTCGCCAATGAAGGAGGTtaagaaggaagaaaagaaagagcagAAAAAGGAAGATAAGGATCTTAAGAAAGACATGAAGAAACCTTCTAAGGACATAAAAAAAGCTACGGCCACTCAGGGAGATGCCAAAAGGCCTGTGCCAAAACCCAAAGTACAGAAGAAAGAAGATTCCTCAAAGAAGGACATTGGGAGCCCtggaaaaccaaaagaaaaggggaaagtaaaaggcatcaagaAAGATGCTAAACCCAGTGCAACCAGCTTGGCCGTAGCTGCCGGAGCAGCTGGTGTAGCAGCAGGGATTGCAGTAGCTTTGGAAGCAGAGAGATCCTTAATGTCTTCTCCTGAAGATCTCACAAAAGACTTTGAGGAGCTTAAGGCTGAAGAAATTACAGAAGATGTTGAGAGTGTAGCTCCAACAGAACAGAAAGAAGAGGAGTCAGTTGTGATGATACAACATGAAGAAATATTGCTCTGCAAAGAGTCGCCTGAAATGGAGGAGACGGCAGAGTCTCTGGATGAAGGAATCACGACTACTGAGGCAGAAGGAGAATGTGGAGAAACCCCAGATGAACTTGAGCCAAGAGATAAAATGACTGTTGATGCCAATGAGAAGTTTGAAGATGAGGGCACTGGATTTGAAGAATCATCAGAAGCTGGGGACTATGAAGAGAAGGGGGAGACTGAGGAGGTTGAAGAACAAGAAGAGACAGTTAAGCATCATGAAGGAGAAGAGCTAGCCGAAGGAGATAAACAAACCAAAGTTGAAGATGCACTAAGTACCACCAAGGGTTTGGAGTCCACAGAAGATGAAGGAGAAGATCTAGAAGAAACAATTGGAAAGGAGGAGGCACAGGAATCAGATGATGAAGTGGAGGATGAGCAGATCACAGTTGTGAAAGATGAAAAGGAGCCCATTGAAGCAGATGAAGTCAGAGACACCGAGGTCGATGAACTTGAGGAGAGGCAACACTTGCCTGTTACAACCCCTCCCAAGATGTCTGCTCCCCAGTCTCCAACAGTTGAGCATACGTCTATTCAAGATGAAACCCTTCCAGGCGGTTCTGAGAGTGAAGCTACAGCCTCTGATGAGGAGAACCGTGAAGAACCCCCAGAGGAATTTACAGCCACCTCAGGCTTCACACAGTCTACTATTGAGATCTCCAGCGAACCAACACCAATGGATGAAATGTCCACCCCTAGGGACATCATGAGTGATGAGACCACGAATGACGAAACAGAATCTCCTTCGCAGAACTTTGTGACGTTTGGACTGGCAGCACAACCCTGTGAATATGACAGAACTAAACTCTCTCCTTTGCCTGATAGCTACAGTGGCTTGACATCTGATCATTCAAAGAGCGACGCCACTGAAGGCAAAGACTATCATGCCTCTGCTTCCACAAtatcaccaccatcatcaatGGAAGAAGACAAAGTTTGCCAGGATTTCCCAAGAGAAGCTATCACACCTAaagaagaggaagatggatACAGGTTTAACTTAGAAACTCCAGACACATTGTCTCTTGATACAAAACTTAGCCCTAGTCAGCTCTCTCCTCTCACGAAGACTCCTACTAGTGAACGCAGTGTTAATTTTGACTTGACTCCAACAGCAATTGCAGCGCCAATTGAGTTAGGCACAACTCTTTCTGAAGTCACCCCCGAGGTGGTTGAGCAATCTACTAGTCCAGATGACAAAACCTTAGAAGGGGCTTCTTCCTCACAGTCAGCGCCTGGAAGTGCAGGTCACACCCCCTATTACCAGTCGCCTGTGGAAGAAAAGACTAGCTCTTTACCATCGGAAACACCTGCAAAAACCCAAGGTCCTGTTATAGTGGAGGTAACCAGTGAACTAAATGAGCTTACTTCTAACAGAATCAGTCCGATGGATGAGCCTGTCCCTGATTCTGCATCCCCTTTTGAGAAGGTACTGTCTCCTCTTCGTAGTCCACCACCTCTGGGATCTGGCTCTCCAACAGAAAGGTCTCCAAGTGCTGAAGGAAAGTTACTCTTTGACCTTGGCGAGCACACTTTGAAAGTAAACCAAGATGTCAGTAAGTCACCAACCATTCAGAGTCCTTCAGGAGGAAGCCCTTCACCTTCACTCTCTTCTCCAGTTAATGCTTTGGAAGTTAAGCTGGAGTCATCACATCTGGAATTGCAAGAGAGTAAAGACACCTTCAGCCTGGCAAGCCCTTCTGAAGACAAGGCAGAAGGTTCAGTGAAAGCCACAACTGACCTGTCACCTGTTTTAGTAGACGCCATGCAATTTGGATCATTTAAGGAGGAGAGTAAAATGTCCATATCGGAAGGAACCACATCGGACAAGTCAGCTACCCCAGTAGATGAGGTTGTAGCCGAGGATACATTTTCCCATATAGAGGGAGTAGCATCGGCCTCAACTGCCTCTCTCGCCACAAGCTCATTCCCAGAACCAACAGCAGACGACGTCTCTCCTTCCCTACATGCCGAAGTGGGCTCTCCACACTCAACAGAGGTGGATGATTCTCTATCTGTGTCAGTGGTCCAGACTCCCACAGCCTTCCAGGAAACTGAGATGTCTCCCTCAAGAGAGGAGTGCCCTAGGCCAATGTCAatttccccagacatttcacctAAAACTGCAAAGTCAAGAACACCTGTGCAGGATGTGAAATCTCCTGAGCAGTCCACTATGTCAGTAGAACTTGACCAGGAGTCTCCTGATCACTCCTTAGCCCTGGACTTCAGCAAGCAGTCCCCAGAGCATCCTGCAGTCAGTTCAAACCTACACATCACTGAAAATGGACCAACAGAAGTCGACTACAGTCCCTCTGACATGCCTGATCCTAGATTTGCAGAGCACTGCATGCCTGCGTTAGACAAACCCATTATTTTCAAGGACACTGATTCTGCACATGTTGCCTCACCTTCTCCAACAGAAGTTTCTCAGTCCACCCCCTCTGCTCACACTCCTTCACAAACCATTTCTCCCTTGAAAGAGGAGCCTATTGCTAGGGCTGCTGAGCCCAGTGACATTTCGTCGCTCGTCTTTGATACCTCAGCGTCTCCAGAGGAACCCCCTGAGGTACCCTCACGAGAGCAGGATAAGTCTCCTTTAACCCCCAAACTGTCACCTCTCACCCATTCTCCACTTTCATCTGACTCATCACTGGTATTAGGAAGTTCTCTGGTGCCTGACAATATGTCACTGAAAATTGGGGAATCTGAACAAAAGCAGGACAAGTCCCCTACCAGTCCAAAAGCTAGCTCTTCTGCTTGCTCGCCACTCCCCCCTGATTCATTATTCAGTGGAAGCTCATTATCCCAAGATCTGTTCACCAGTAAAGCTGATgacgaaaaacaaaataaggagAAATCACCTACACCCCCACAGGCCGCATCCCCTTCAGTGACACCACTTTCCTCAGCCTCATCATTTGCCCTGGGGACCATGCTGGGATTTAACAAAGCTGAGGAACCTGCCCCAGTTCAATCCAAATCCCCTTTCTCGCCTAGAGCTGCATCTCCAGGATCTTCCCCACTTTCACCTGGTTCTTCATACATTGTAGGAAGTTCACCAGCACCAGAAAGTATACACTTGATGCCAGAAGAGACTTCCTCTGAAGAGGTAAAATCTCCAGTTAGTCCCAAAGTACCATCACCTTCATATTCAATACTTTCCTCCTATTCCTCTGGATTTCAGGATCAGTTGAGCACGGCTTCACTGTCATTATCCTCAGCTACTTCACAAGTGCAGGGGTCCAGCGCCCTTTACAGGGAGGAACCGCAGCACCTTAAATCACCTGTAGAATTTGAAACAACTGACGTGAAAGTAGCAGAGGAACTAAAATGTATGGGTGGATCCAGTGGTGAAGGAAGCTCCAAAAAGACCCCGTCACCACAGCCCCGAACAGATGTTGATTTATGCTTGGTTACGTCTTGCGAATACAGACACCCTAAAACAGAACTGTCCCCTTCTTTCATTAATCCCAGCCCACTGGAGTTCTTTGCCAATGAGGATAACTCACAAGAAGATGATAAACCTTTAACGCAGTCTGGGGGAGGTCAACCCCCGTCTGGTGGGAAGCACCATGCGAGACAATGTGAGGAAACTCCACCAACATCAATTAGTGAGTCGGCACCTTCCCAGACAGACTCCGATGTCCCCCCCGGAACAGAAGAATGTCCGTCCATTACTGCTGATGCCAACATTGACTCAGAAGATGAATCCGAGACTCTCCCAACAGACCGGACCCTAACCTACAGGCACGTAGACCCTCCACCAGTAGCCTTCCGAGACTCGgctccttctcctcctcacCCTGATGTCTGTATGGTGGATCCAGAGGCAATCCCAGTCGACCAGAACCTAGGAAAGCCCATAAAGAAAGAAGgtaaagaaaagacaaagaacAAGAAGCCAGGGAATAAGACCAAGTCTTCCTCACCAGCTAGGAAAAGTGATATCAAGCCCAAACCATCCCCGAGTATTACAAAAAGTAGTGCTGCCAAGGAGGCTTTAGACAAGTCTTCAAAAACTGCATCTCCAAAGAAGAAAAGCCCACCGGCAGCCAAGGAAGCTGTCAGCAATGAAGtgaagggtgggggggagaaagaTGCCAAGAATGCGACCAATACCTCTGCTTCTAAGGGGACTAAAAGTACGACTACAGGCCCTGGAAGTGGCAAGGCATCGGGAGGGAACCCTGTACCCAACTGTCCTCCAGTGTACCTCGACCTGGTCTACATCCCCAACCACTGTAGTGCCAAGAACGTGGATGCAGAGTTCTTCAAGCGAGTGAGGTCCTCCTACTATGTTGTGAGCGGCAACGACTTGGCGGCTCAAGAACCGAGCAAGGCAGTGCTGGACTCTCTGTTGGAGGGGAAAGCGCAGTGGGGTAACAACATGCAGGTCACGCTGATCCCAACCCACGACTCGGAGGTGATGAGGGAGTGGTACCAGCAGACTCACGAGAAGCAGCAGGCCCTGAACATCATGGTGCTGGCGAGCAGCAGCACGGTGGTCATGCAGGATGAGTCCTTCCCTGCATGTAAGATCGAACTGTGATCCCGCCGCCCGGCGCTGAGCCTGCTCTACTGCGTGACGTCTtcaatgtgaaacaaataaagcaatggAAATAAGAACACATCAAAATTCTgccaaaaaaaagagagaaaaatatctaCCATTCTATTGGTGATGCAAGTCACTAACTAATGCAGTCTTTGTTGATTACTAAGGCACATATTCCTCACAAAACAGGTTTCAAACTACTAAACTGAGGAGAATTGACAGCACTAGAGGGgttctttgttattgttttatgtttttcgTTACACACAGCCGGACAGAGAAGGATTTCATGTGCAACTGCAGTAGTTTGAATCCTGTTTGCTGAGCAGGAACATGTTTCAATTAATATGCAAAGATAATTACCCAAGGCATGCTCCCAGTGGAAACGCTACTCCACAATTAGCCCTCACCGTTCCGCAATGTAATTTATTCTTAAGAAACCTGCATGATCataaactaataatataaataaccaTACAAGGAAAAGAACATTGGCTTTTACCCTGAAGCATAGACCAAAGGATAAGGGAGTACATCAAAACAAACCGTAATAAAAAAATGCCTTAGAAAGTGACTTGAATGTAAGAGATACCTGATGCACTTATTTCTAATGAGAAACAGCAGGTGTTGAGATCAAAATAATTACGATTCAAAAGAAAGCCAGTGTCCCATCATCTTAGCAGCAGCGTAGTGTAGAAACAGTGCCgccgtgtgagtgtgtgtgtttttacgTGTAGGAAGAGTCAGTGGATCCTGATAGGAAGCGATTTTTAAAGGAGTGACTGTCCCATTGATTTGAACGTATTCGCTAACATTTGTAGGGGAAGAGATTCGaggacatttctaaataaatcaatcttgtGTGAAAGCCTAAggtaatgtttttattcctttctAAATTAAAGGGCACTGAAAGGCGGATGTaatggggaagaaaaacagaacataaaaaacaactgtATTCATGGTGTGGGAGTTCAGTCCATATTacaatgtctttcttttttaaggattataaatgtgattttactCTGGCttttttgaaatgatttaataCTAAACGGACCAGAATAGAAAGTGTCTTGCTACTTTATTTGGAGGCGTTCCCATGAAACGAAGGGAAGTCTATTTCCTCTCtcagatgtgtttttaatgtaaggTATGGAAGTGGATGGCCATTCCCAATGTCCCGCAGTTCTGGACAGACGAGCAGCCGTACCGGAGCCCCCCTCTCTCGGGCCGCAGTGTTAGGAGTCAAGTCAGCCGAGCCTGGTGTTCGTAGCGCCTGGCTCTCGTGGATGGTTTGCAGTATTGCTTTTCCGCGAGTGCATTACTGACGTTAGCAGCTTCCTTAGCCAGAACCTCATTTATTTTTGCGATACGTTTATGATTGTTTACTGtgagcactttgttttgcacttaagTTGACATGAGCCTTGTAGTCTGGGACCAGTGaagttctgtttgtttgttccgTCAGACCAGTtcgatttaaaaataataaaaaagccacccatattatttaaaactcCTTTGTCCCCCCCATTGCCTTCAGCAGACGTTCCAAAGAGGAAAGAACTGTAAATGAACTCCTTAGCTGTGATTTTTATGCAATAGCTTGTTATACAAGCTGTTTATAACGCTACGGTATCTTAGCTGTGAAACAGAACGACACCAGACTACGACTGCATGACCATGAAGGGGGTTTTAAAAGAGTCATGACAGGAAGGGGGTCAGCgagtttttttcatttgtatgtatatgtatacacttacacacacacaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgatgccaatgtttttaattcaacacGTTTCAATCTGTTATTTCAATTAAGTGAGGATCCTTCCCTGCTTCTCAGATCAAGCTGGTCCTGTAATGAAGTGGATCGGGCTCAGTGCAGCCCGCTGGAAGTGGGTGGCTGTGTTCAGTTTGTGAAAAGAGATGCTTTCCTACTTTAAGggaaatgtttgttgttttttttaaactgtactataattataaatacCTTTGTGGCGGGCGAATGGGAAGTGTCATGTGCATGTGTAAtatactttcaatgtatttaagatttgtttgtttgtttgattgatttttggAGAGGAAGAAGATGTTTAgaaatgacagaaataaaataaaaactgcacgTCCATTTAGTTACGAATCCAATAAAACGTCACGCTAGACACACTAGCTCACAGGACAGACAGCGGCCTTTACTGCGAGACTCCTCCACTCGACAGCCATCGCCTCCTGTTCAGATACACAATAATGCACAACTTGTACACCTGTACTCTGACAATAGACCCCCTGAGCTGTACAGCTGAAGGGACTTTCTAAAGACAACAGCAGTATCCCAGCTCCCTTCTGTCATAAAGGGGATCTTCACAACCGTGTAGATGAATCCCCGGAGACACGAGACTGGAGATGTGTTGGGGATACAACTTCACACTTTAACCGTTCTATATATTCAAACTGACGCATCTTTTGCCATGATTAAAACTCGACTATCTGAATCGAGTCCACCGCTGACAGCCTGCAATAGACATGTCTACGGACGCGGTGCATTGCGCTTCTGACTTCACACTTCCAGACACCAGATTAAAACACAACGGCCAGAGCCTCGCCTTGGGAAACGAGCCTCATCCCGCCGACCGAGCTGCGAGTCGGCGGCTCCACCGCAGCACCGCAGCACCAGAACTGCAGCCCCGCGCATGAACATCATTACCGATTTCCACAGCAAGGTACACCCCCCTCCGAGAGCCACCTGGCGCCGCCGCCCCCCCCCGGGTGATCGTTTGTGTGTCCGTCCGCAGCCGTGTGTGGTCCTTGTCTTGTAATCTTGCATCATTCTATCCTTTCCTGTCATATCGAATGTAGAGGTTAGTTTCAAGTGGAAGTATAACGTAGTGCTTTTCTGATATTTGTGTGCAATATCCTCCTTCTCCCACACGGGCATTTGATGTAAAGGGAACTACaagaaacagaattaaaataaaacccacaatAAAGGTGATTGTGGAAACGA

Function

GO: NA

KEGG:

id description
K10429 MAP1; microtubule-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103549 lncRNA upstream 28839 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 66119 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 84165 40776954 ~ 40777510 (+) True G82968
TU103507 lncRNA upstream 170197 40690895 ~ 40691478 (+) True G82940
TU103463 lncRNA upstream 282899 40576746 ~ 40578776 (+) True AMCG00010738
TU103581 lncRNA downstream 50601 40927179 ~ 40930030 (+) False G83001
TU103638 lncRNA downstream 239281 41115859 ~ 41116188 (+) True G83045
AMCG00010749 mRNA upstream 16294 40832082 ~ 40845381 (+) True AMCG00010749
AMCG00010743 mRNA upstream 133376 40719299 ~ 40728299 (+) True AMCG00010743
AMCG00010747 mRNA upstream 153247 40707259 ~ 40708428 (+) True AMCG00010747
AMCG00010744 mRNA upstream 159475 40697868 ~ 40702200 (+) True AMCG00010744
AMCG00010745 mRNA upstream 168346 40692967 ~ 40693329 (+) True AMCG00010745
AMCG00010750 mRNA downstream 18222 40894800 ~ 40902456 (+) True AMCG00010750
AMCG00010751 mRNA downstream 66875 40943453 ~ 40960484 (+) True AMCG00010751
AMCG00010759 mRNA downstream 107014 40983592 ~ 41020709 (+) True AMCG00010759
AMCG00010756 mRNA downstream 157108 41033686 ~ 41036633 (+) True AMCG00010756
AMCG00010760 mRNA downstream 249422 41126000 ~ 41130780 (+) True AMCG00010760
TU103506 other upstream 170825 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 306821 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 811860 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1012306 39848946 ~ 39849369 (+) True G82671
TU102822 other upstream 2070907 38782079 ~ 38790768 (+) False AMCG00010687
TU103580 other downstream 50601 40927179 ~ 40930030 (+) True G83001

Expression Profile