RNA id: AMCG00010750



Basic Information


Item Value
RNA id AMCG00010750
length 1956
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00010750
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 40894800 ~ 40902456 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGGTGCGAGCGGCCGGGGGTCGCGCTGCGGCGCTGCTGTCCGGTGTCGCTCACAGGGGCTCTGCGCCCGGGCTGGCAGGCTGCTGGACGGGCAGGATCGGCGcacaTTATTTCAAAAAGTTAGACGACAAGATAAAGAGAAACGACCTCATCCTGAAAGATGAATTAAAGCTGCTCTTGCATCTGTGCCAAACTCCTGAGCACGTGGAAGTGGCCAAGAAGGCCATCTACAGGTACCACGAGGAGAACCGGAACGTGGCTTTCGGGGAGTTCCGGTTCGGGCCCCTGTTTGCCCTGAAAGGATTCTTTTCAGACTCAACTTCCTTCAACATCGTGATGGACATGATGTTTATGAAAGGATACTACGAGAGTAAGAACTCCAAGAAACGGGAGGTGCAGCCATCGTACGCACCTCCTGTGAAGTCAGACCCGGTTAGCGGTGCCGAGTCGCTGAGAGCCCCTTCAGAcccaggaaacaggaagtgctgCTCTGAGCGGGAAGGAACTGAGAGGCCACGTTGCCCCAGCCTCACCCCCAAGTCTCAGCAGCCTGGTGATGGACGCGTCTCGCTCTCTCTGCCCCTGGTGTCCTCAGCTGCTCTGGAGGTGCTGATGAACATGAGGAAGCAAGGCGTGCACTTCAACAAGGACACCTTCACCCTGGCCTTCGCAGTCTGCTATAAACTGAACTCCCCCGAGTCGTACCGGATCTGCACCGCGCTGCTGGAGGAGTCGCACGTCAAGGGCAATCTGATCCCCCGCATCGCCTACTGTTTCGCTGTGGCGCTGGCGCTCAGACAGGTGGGTCTCGACACCCGAGAGACGCTGTGTGGCCCCGCGGAGGACATTGAAAACGCCAAATCCGTTTACTCCCGAATCATGAACACCGACAGCAAGATATGCCTGAATCTGAAGGTCCTCATTTTGCTCAAGTCTGGGGCAGAAGCGGATCTTCTCGCTCTGCTGACGTCGTCGTTCGTCCAAGATACTCTGAGGTTCGTGAAGAAGCCGGAATTCTCTCAGGAAGTGATCTCTGTGGTGCAGGAGGGGATGGGGGGCAGCCGGCCGCAGATGGAGACGGCGCTGTCGCGGCTGCAGTTGGCGGGACAGGTCACCGAGCCCAGCCTGGACCACATGCTGTGCCACACCCCCCACAGCAAGAGGAAGCCCGCGGCGCTGCTGGACCAGAGGAAGACCAGCCGGCGCACCTTCAGGCCCCTGCAGTCCGCCCTGCTGTCAGAGTAGTGACTCCGGGGCCGACCTGAATGGGTCTGAACTGAACGGGCCCAGCGAGTCCTGCTGAGCCTGCAGCTCCGGCCCGTTTGTTTGCTTGGTGGAAGTTTTGAACTTTGCTGGAGGCCCCTGGGGAATGCAGTTCAAATAAAGTCGGTTTCCTAGGGAGCTACACTTGGGTTTAATGGTTAGAAGCCAGTTGGCTGTAAGGAATGTCTCCCAGAACCTCAGGTTGTCCGTTTCCCCTTCTCCCTGCCGTCAAAGTGTTAAAGGACAAGTCCAAGTAGAGAGAGTGTGTCATAGATGAGCCAATTAGCAACCTGCACATTGTCCTTTTGTCATTTCAGTCTCTTGTTGTTCTGTTGTACAAATACAGGCTGTGTTTGGGTCTTGAGAGCAAAGTGCGAGTGAGAGGACGGTCACaggtacacaaacacacacacgcctcCCTGACCATGTGCCTCTCATTGCCCTTTCTCACGCCAGTAAACGCGTCCAAAAACATGGCCTGTATGTCCCGGAGCCCCATGTCTGTAGACGACACACTAAACCTTTCAATACAAACTGTTTTCTTCAAACAAGCTGCCGAGTGTTCTTTCCCCAGGAATATAATCTCTAGATCCACAATGTCTTAATGAACTGTCACATCTTCCATGATGTTATAATTGTCAGAAGGAATAAAGTTACACTTTCAGACACTGGTTTGGAGGGAGAGAGTTG

Function


GO: NA

KEGG:

id description
K17711 PTCD2; pentatricopeptide repeat domain-containing protein 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU103549 lncRNA upstream 61964 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 99244 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 117290 40776954 ~ 40777510 (+) True G82968
TU103507 lncRNA upstream 203322 40690895 ~ 40691478 (+) True G82940
TU103463 lncRNA upstream 316024 40576746 ~ 40578776 (+) True AMCG00010738
TU103581 lncRNA downstream 24723 40927179 ~ 40930030 (+) False G83001
TU103638 lncRNA downstream 213403 41115859 ~ 41116188 (+) True G83045
AMCG00010748 mRNA upstream 18222 40861675 ~ 40876578 (+) True AMCG00010748
AMCG00010749 mRNA upstream 49419 40832082 ~ 40845381 (+) True AMCG00010749
AMCG00010743 mRNA upstream 166501 40719299 ~ 40728299 (+) True AMCG00010743
AMCG00010747 mRNA upstream 186372 40707259 ~ 40708428 (+) True AMCG00010747
AMCG00010744 mRNA upstream 192600 40697868 ~ 40702200 (+) True AMCG00010744
AMCG00010751 mRNA downstream 40997 40943453 ~ 40960484 (+) True AMCG00010751
AMCG00010759 mRNA downstream 81136 40983592 ~ 41020709 (+) True AMCG00010759
AMCG00010756 mRNA downstream 131230 41033686 ~ 41036633 (+) True AMCG00010756
AMCG00010760 mRNA downstream 223544 41126000 ~ 41130780 (+) True AMCG00010760
AMCG00010757 mRNA downstream 235174 41137630 ~ 41146739 (+) True AMCG00010757
TU103506 other upstream 203950 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 339946 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 844985 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1045431 39848946 ~ 39849369 (+) True G82671
TU102822 other upstream 2104032 38782079 ~ 38790768 (+) False AMCG00010687
TU103580 other downstream 24723 40927179 ~ 40930030 (+) True G83001

Expression Profile