RNA id: AMCG00010751


Basic Information

Item Value
RNA id AMCG00010751
length 2514
RNA type mRNA
GC content 0.60
exon number 20
gene id AMCG00010751
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 40943453 ~ 40960484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCTGGGCCGGATCTGTCCAGCTGGGTTCCCAGGCTGGGCTGGGCCTGGTGTGAGGCTCGGTcagctgtgcagggggagacGGGCCGAGGACAGTCCAGAGAGTCACCGCTGTCCCGTGTCTGTTTGCAGGGGGCGTTCGGAGCTCTGCAGAAGATCTGCGAGGATTCGGCCGAGATCCTGGACAGCGACATCCTCGACCGGCCGCTCAACATCATGATCCCCAAGTTCCTGCAGTTCTTTAAACACAGCAGTCCGAAAATAAGGTCCCATGCTGTTGCGTGTGTCAACCAGTTCATCATCAGCAGAACTCAAGCCCTCATGCTGCACATCGATTCCTTCATCGAGAACCTGTTTGCGCTGGCCGGGGACGAGGAGCCGGAAGTCCGCAAGAACGTGTGCCGCGCGCTGGTCATGCTGCTGGAGGTGCGCATGGACCGGCTGCTGCCCCAGATGCACAACATCATCGAGTACATGCTGCAGCGGACCCAGGACCCTGACGAGAACGTGGCCCTGGAGGCCTGCGAGTTCTGGCTGACTCTGGCTGAGCAGCCGGTGTGTAAAGACGTGCTTTGTGGACACCTGTCCAAGCTGATTCCCGTCCTGGTGAATGGAATGAAATACTCGGAAATTGACATTATCCTCCTGAAGGGGGACGTGGAGGAGGACGAGGCCGTGCCGGACAGCGAGCAGGACATCCGACCGCGTTTCCACCGCTCTCGCACCGTGGCGCAGCAGCACGAGGCGGATGGCGccggggaggaggaggatgacgaTGACCTGGACGACGACGATGACACCATCTCGGACTGGAACCTGCGGAAGTGCTCAGCCGCGGCGCTGGACGTCCTGGCCAACGTGTTCAGGGACGACCTGCTCCTGCACATCCTGCCGCTGCTGAAAGAGCTGCTGTTCCACCCGGAGTGGGTCATCAAGGAGTCGGGCATCCTGGGCATGATCCCCTACCTGCCCGAGCTCATCCCGCACCTGGTCCAGTGTCTGTCGGACAAGAAGGCCCTGGTGCGCTCCATCACCTGCTGGACGCTGAGCCGCTACGCCCACTGGGTGGAGGAAGCCTGCACCGAGCTGGTGCCCTACCTGGCCTACATCCTGGACACGCTGGTGTTCGCCTTCAGCAAGTACCAGCACAAGAACCTGCTGATCCTGTACGACGCCATCGGCACGCTGGCCGACTCGGTGGGACACCACCTCAACAAACCCGAGTACATCCAGATGTTGATGCCCCCCCTCATTCAGAAGTGGAACCAGCTGAAGGATGAAGACAAGGACCTGTTCCCATTGCTGGAGTGCCTGTCCTCCGTGGCCACCGCCCTGCAGTCGGGCTTCCTGCCGTACTGTGAGCCGGTGTACCAGCGCTGTGTCAACCTGGTGCAGAAGACGCTGGCGCAGGCCATGCTGCACAACGCCCAGCCGGACCAGTACGAGGCTCCGGACAAGGACTTCATGATCGTGGCGCTGGACCTGCTGAGCGGGTTGGCAGAGGGGCTGGGGGGCAACATCGAGCAGCTGGTGGCCCGCAGCAACATCCTCACGCTGATGTACCAGTGCATGCAGGACAAGATGCCCGAGGTCCGGCAGAGTTCATTCGCCTTGCTGGGCGACTTAACCAAGGCTTGCTTCCAGCACGTGAAGCCTTGCATCGCGGATTTCATGCCAATTCTGGGCACAAACCTCAACCCTGAGTTGATTTCCGTGTGCAACAATGCGACATGGGCCATAGGAGAGATCTCTATTCAGATGGGAGCTGAAATGCAGCCCTACATTCCCATGGTGCTGCACCAGCTGGTGGAGATCATTAACCGGCCCAACACCCCCAAGACGTTGTTGGAGAACACAGCAATAACAATTGGTCGTCTTGGTTACGTTTGTCCTCAAGAGGTGGCTCCCATGCTACAGCAGTTTATAAGACCCTGGTGCACCTCCCTGCGCAATATCAGGGACAACGAGGAGAAGGACTCGGCGTTTCGGGGAATCTGCACTATGATCAGCGTCAACCCCGGAGGCGTCGTGCAGgACTTTATATTCTTCTGTGACGCAGTCGCCTCCTGGGTCAGTCCCAAGGACGACCTCAGAGACATGTTCTGCAAGATCCTCCACGGGTTTAAGAACCAGGTGGGCGACGAGAACTGGAGGCGCTTCTCGGACCAGTTCCCTCTGCCCCTCAAGGAGCGGCTTGCGGCCTATTACGGAGTCTTTCACTGCGGGAGACATCGGGGAGCCTCTGTACCCAGGGACAATGTGACCCTTACTGGGGGGGAAGGGAAGGCCAGCGGGGGGAGCAGCACCACACGGGACCCCCCGGGGCGGGGTGGGAGGGGGGCGTCTGCCGGCGCTCTGTTCTGCGGGGCCACGGGGACACCCAGAGCATCCGAGGGAGGAAATCTTAATCTTTTCACAACTCAATCAGAAACGAAGACGTCAACTAAGAGATTTCACGTCCGACTCCAGAGCACATTAGTACCAACGGAAATAGACAAACAAACCTCGGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103581 lncRNA upstream 13423 40927179 ~ 40930030 (+) False G83001
TU103549 lncRNA upstream 110617 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 147897 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 165943 40776954 ~ 40777510 (+) True G82968
TU103507 lncRNA upstream 251975 40690895 ~ 40691478 (+) True G82940
TU103638 lncRNA downstream 155375 41115859 ~ 41116188 (+) True G83045
AMCG00010750 mRNA upstream 40997 40894800 ~ 40902456 (+) True AMCG00010750
AMCG00010748 mRNA upstream 66875 40861675 ~ 40876578 (+) True AMCG00010748
AMCG00010749 mRNA upstream 98072 40832082 ~ 40845381 (+) True AMCG00010749
AMCG00010743 mRNA upstream 215154 40719299 ~ 40728299 (+) True AMCG00010743
AMCG00010747 mRNA upstream 235025 40707259 ~ 40708428 (+) True AMCG00010747
AMCG00010759 mRNA downstream 23108 40983592 ~ 41020709 (+) True AMCG00010759
AMCG00010756 mRNA downstream 73202 41033686 ~ 41036633 (+) True AMCG00010756
AMCG00010760 mRNA downstream 165516 41126000 ~ 41130780 (+) True AMCG00010760
AMCG00010757 mRNA downstream 177146 41137630 ~ 41146739 (+) True AMCG00010757
AMCG00010758 mRNA downstream 190920 41151404 ~ 41158268 (+) True AMCG00010758
TU103580 other upstream 13423 40927179 ~ 40930030 (+) True G83001
TU103506 other upstream 252603 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 388599 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 893638 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1094084 39848946 ~ 39849369 (+) True G82671

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060647 False 5804 mRNA 0.42 24 NC_007116.7 35202063 ~ 35252761 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_00677565_00705493.mRNA False 2818 mRNA 0.48 23 CI01000071 677341 ~ 705513 (-)