RNA id: AMCG00010756


Basic Information

Item Value
RNA id AMCG00010756
length 2374
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00010756
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 41033686 ~ 41036633 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAACCGAGACCAGCTAGGAattccattaaatatttacagtgtgtGGTATTTCTCTGGGAAGATGAATGTTATGCGTTACAGAGTGAAGTAGCCTACATATAAGTTGGACGGGCTATTCTTTTAAAGTAGTCAAAGACAGTCCCAAGGGCCTTGAGATGGATCAACTTCGTAACAATGTTTATAGCAATGCCAATGCCTATAATAGAAGCAGCAACAATGAGGACTTCTCCGTCAGCGTTTTCTCTGTCACCCCGTATCCACCCAACCGGTCCGACATCGAGGTGTCAGATGGGGACAAGGCTGGGGCCACGCTTCTGTTTTCTGGCATCTTTCTGGGCTTGGTGGGATTAGCTTTCACAGTGATGGGCTGGATCAGCTATGACAGCAGCAAGGATTTCGAGTGGACTCAGTTACTCGGCCCCATCCTCCTCTCGGTGGGGGTGACATTCGTGTTGATTGGGGTTTGCAAGTTTAAGATGCTGACCTGCACGGTCTGTAAGCAACTTGAAGACCCGACACCGGAGGCCGACGCGGCACAGTGCGGACAGTCCTTTGTCTTCTCTGGCATCAACCAGCCCATCACCTTCCATGGGGCCACGGTGGTGCAGTACATCCCGCCTGGCTGCGCCGCTCCGAAGCCAGATGGACCGCTGCGGAATAATTCCCGCGCTGCTCACCCACTCAATGGAGTCTCAGCCACCACTGCATGTCCCCCGCAGTACTACACGATATACCCACGGGACAACTCATCTTTCGTTGCGGACAACCTCTGCCCTGCTAGCCGAGGGTCTGACAGCACTGACAACAGCAGGTGCGAGCGGAGCGGGGAGGAGGCGGAGAGAAAAGCAGCGTCCGAGGCCGGCAGCTCCGCCCCCCCGCCTTATGACGACATCTTCCGCGAGTCCCTCTCCGCAGACAGCCCCACCTGAGTCGCTGACGTCATCTCGGTGGCTCTGACGTGTTAAACGGGACACTGTTTctactttaaaatgcaatttcttGCTGTTTGCTACCTTTTGTTAATGTATGCATCtggattcaaaataaaataaagtgggTAAAATCAAACGAACACAAgcaaccaaataataataataataataataataataataataataataataatttaactaaacCGTTAGTATTTTCCAGAGATCTAATCTGTAAtttacataatgaaataaaatgctgtaacAGTGTCTGTCTTGTCTCTATCTCTGTTAAAACAGTTGAAGGCGCGCTGTCTGATCCTGTATAAGAAACTGCGATTCAATCTGCACCTCGACAGCACCACGCATGTCTGGTACATATTCCTCCAGAACTGGATTCATCGCAGCGCTGTCCAGGGTCCTGCAGCGATACCGTTCACTGGGACTGGGCCAGAACTCACTCCACAGACCCGGATCTGTGTGCGGCATGGACACGCCGTGGAGTATAGCCTTACAAGCGCCCTAGTCCGAACTACGGTGTTTGCTTTCattatctgtctctgtctgtaaGACCAGCCCAGGCGAGGTCGGTTATTGACACCAGCACAGAGACCGTGTTTGTCTGTCTCAGGATGATCTGCCTTGTGTATATGGAAGAGCGCCAAGACAGGGCACAGCAGATTAAAAATGCAGGGCACTATAACTGAACCAGTATCAGCAAAAACACACAGGTAACTTTTAAACAGGCCTAATTTTGACTGCGGACAGAAACTACGCAAGAAAATCTTAGGGATTTCACTCGAGTTAATTAAACATTCCCGTAACACTGTGTGGGCCTTGTTCTGCTTGAACTGTATAATTAACCCCTTCGGATAATTGCCCATGCCATTAGAACATACTCAGAAAGGATCAAACGATTAAGACACGATAGCaatgaagaaaaagtaaaaacctcgctacattaattttaatttaattaattgattattgcagtgattaattcattaatgaattagttaattaattaaaggggACCTATTTTGTGAAGACTGTGTTATTAACACCAGCCCAGTACAGAAGGTCCTCAGAGATCAGCTCTCTGCCCCACTTACACTCCAGTCCGGCACCGGGACCCTGTGGGCTGAGCGCAGGGCTGTGGGGCCGCATGGGGGCAGCAGAGAGTCCGTGTGAACGTCTGAAAGAGAAATTAgaacagttgtgtgtgtgtgtgtgtgtgtatatatatatatacaactgttctaatttctctttcagatattttaaattaatgaattacgaaattaattaattaatttaaaagaagacGATGAAATAGTTTCCATATCGCCTAGATTAGAACTGAAATGAAACAGTGGGCTATTCTCAGTGATAACAATTCAACATGTAtcgtgtattttatttatattcatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103581 lncRNA upstream 103656 40927179 ~ 40930030 (+) False G83001
TU103549 lncRNA upstream 200850 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 238130 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 256176 40776954 ~ 40777510 (+) True G82968
TU103507 lncRNA upstream 342208 40690895 ~ 40691478 (+) True G82940
TU103638 lncRNA downstream 79226 41115859 ~ 41116188 (+) True G83045
AMCG00010759 mRNA upstream 12977 40983592 ~ 41020709 (+) True AMCG00010759
AMCG00010751 mRNA upstream 73202 40943453 ~ 40960484 (+) True AMCG00010751
AMCG00010750 mRNA upstream 131230 40894800 ~ 40902456 (+) True AMCG00010750
AMCG00010748 mRNA upstream 157108 40861675 ~ 40876578 (+) True AMCG00010748
AMCG00010749 mRNA upstream 188305 40832082 ~ 40845381 (+) True AMCG00010749
AMCG00010760 mRNA downstream 89367 41126000 ~ 41130780 (+) True AMCG00010760
AMCG00010757 mRNA downstream 100997 41137630 ~ 41146739 (+) True AMCG00010757
AMCG00010758 mRNA downstream 114771 41151404 ~ 41158268 (+) True AMCG00010758
TU103580 other upstream 103656 40927179 ~ 40930030 (+) True G83001
TU103506 other upstream 342836 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 478832 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 983871 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1184317 39848946 ~ 39849369 (+) True G82671

Expression Profile