RNA id: AMCG00010757


Basic Information

Item Value
RNA id AMCG00010757
length 1572
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00010757
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 41137630 ~ 41146739 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCTTTTAAACCCACAAAAATTCAGACCTACCCCAGGCTTGGAGAGAAAGTTACCCAAGACACTTTATACTGGAAGAACTATAAGACCCCGGTGCAGATAAAGGAATTTGGTGCAATTACAAAAATTGATGTCTCTCCACTCCCTCCATATAATTATGCAATCACGGCATCTACAAGAATCCATATATATGGCCGCTACTCGCAGGAGCCAGTGAAAAACTTCTCTCGGTTTAAAGACACGGCGTACTGCGGAACGTACCGCTGTGACGGGCAGCTGCTGGTGGCGGGCAGCGAGGATGCGTCCGTACGCTTGTTTGACGTCAGCGGCAGGGTGGCTCTGAGGCAGTTCTCTGGCCATACTAAGGCTGTGCATGTCACAGACTTCACTTCGGACAGGTATCGTATCTTGTCGGGGTCGGATGACTACACCTGTCGCCTGTGGGACATCCCAAACTCGGAAGAGCTCATCTCCTACCGGGAGCACACGGATTATGTTCGATGTGGAACCACAAGCAAGTTGAACCCAGACCTTTTTATTACAGGCTCCTATGACCACACAGTGAAGGTGTTCGATGCGCGGACGGAGCGCGGGGTGATGACCATGGACCACGGGCAGCCGGTGGAGAGCGTGTTGCTGTTCCCCTCAGAAGGACTGCTGGTGTCGGCAGGTGGGCGGTATCTGAAGGTGTGGGACATGCTCAAGGGCGGGCAGCAGCTCGTGTCTCTGAAGAACCATCATAAGACTGTGACGTGTCTCTGTCTGAGCAGCTCAGGGCAGCGGCTGCTCTCGGGATCTCTGGACAGGCATGTGAAAGTCTACAGCACCACGACCTACAAAGTAGTTCACAGTTTTGATTACGCTTCATCCATTTTGAGTGTTGCCCTGGCACCTGACGACGAGGCGGTTATCGTTGGGATGACCAATGGGGTGCTGAGCGTCAAACATAAGAAGCACCCGGAGGAGAGCGTGCCGGCCGCAGGCAAGAGGAGACGGCCAGCCTACCGTTTCCTCGTCAAGGGGAAGAACTACGTGCCAAAGCAGGACGACCTGTTGGTCAGCAAGCCTGTGAAAGCGCACCTGAGGAAGTATGACAAGCAGCTGAAGAGCTTCCAGGTGTCCAAGGCTCTGGACACGGTGCTGGAGaCAAGGATCCGAGTGAAGAGCCCCGAGGTGACGGTGGCCGTGATGCAGGAGCTGAACCGCAGAGGAACCCTGCGCAATGCACTGGCCGGCCGCGAGGAGAAAAGCCTCTCGCTGCTGCTCAGCTTCCTCATCAGGCATGTGGTCGACCCCAGGTTTGCCCCGGTCTTAGTCAATGTTGCGGAAATTATTTTAGATATCTATGTGCGAGTTGTGGGGCAGTCAGCCGTGATAGACAGGCAGGTTGTGAAGCTTCAGGAGCTGATCGAGAAGGAGATTGACTATCAGGAGGAACTGGTGGAGGTTTTGGGAATGATGGACACCCTGTTTGCCACAATGACAGTCCGGAAAGAGGCTGCAGCCCCCGATCGTGCCAGCGCTGCCCTGGAGCCCGTGGGACAGAGGGACCAGTTAGAGGCTGCGTGA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14549 UTP15; U3 small nucleolar RNA-associated protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103638 lncRNA upstream 21442 41115859 ~ 41116188 (+) True G83045
TU103581 lncRNA upstream 207600 40927179 ~ 40930030 (+) False G83001
TU103549 lncRNA upstream 304794 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 342074 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 360120 40776954 ~ 40777510 (+) True G82968
AMCG00010760 mRNA upstream 6850 41126000 ~ 41130780 (+) True AMCG00010760
AMCG00010756 mRNA upstream 100997 41033686 ~ 41036633 (+) True AMCG00010756
AMCG00010759 mRNA upstream 116921 40983592 ~ 41020709 (+) True AMCG00010759
AMCG00010751 mRNA upstream 177146 40943453 ~ 40960484 (+) True AMCG00010751
AMCG00010750 mRNA upstream 235174 40894800 ~ 40902456 (+) True AMCG00010750
AMCG00010758 mRNA downstream 4665 41151404 ~ 41158268 (+) True AMCG00010758
TU103580 other upstream 207600 40927179 ~ 40930030 (+) True G83001
TU103506 other upstream 446780 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 582776 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 1087815 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1288261 39848946 ~ 39849369 (+) True G82671

Expression Profile