RNA id: AMCG00010759


Basic Information

Item Value
RNA id AMCG00010759
length 6398
RNA type mRNA
GC content 0.52
exon number 27
gene id AMCG00010759
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 40983592 ~ 41020709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gattgattccagggtgaaaagaaCAATGGATTTGATGTGTTGTACCACAACATGAAACATGGACAGATTTCAACGAAGGAGCTGTCGGACTTCATTAGAGAAAGGGCTACGATCGAGGAAGCGTACGCCAGGTCGATGACCAAACTGGCCAAATCGGCCAGCAACTTCTCCCAGTTAGGGACGTTTGCGCCCGTGTGGGACGTGTTCAAAACCTCCACTGAGAAGCTGGCGATCTGTCATTTGGAGCTGGTGCGGAAACTTCAGGAGTTAATCAAAGAGGTGCAGAAATATGGGGAAGACCAGGTCAAGGCTCATAAAAAGACCAAGGAAGAGGTTGCGACGACGCTGGAAGCCGTGCAGAACATCCAGAGCCTCTCTCAAGCCCTGCAGAAGTCCAAGGAGAACTACAACAACAAGAGTGTGGACCAGGAGCGGCTGAGGAAGGAGGGAGCCACGCAGAGGGAGGTGGACAAGGCGGGAGTGAAGACCAAGAAAGCCACCGAGTCGTACAAGCTGTATGTGGAGAAATATGCCACCGCAAAATCTGAGTTTGAGCAGAAGATGTCTGAGACAGCACAGAAATTTCAGGACATCGAGGAAGCTCACATCCAGAACATGAAGGAGATGATTCACTCGTATTCCCGGTCCATAGAAGAGACGCACTTACAGATCGGGGAGACAAGTGTTGACTTTGATTTGGGGGAAGATCAGACCTCGGTGATGCTCACCAGACACCGTGCTGTGGAACCGGCCCTGTGGGGCTGTGCCGTTTCTAGTGTGCTGTTTTGTACTGCTCTGGgtCCCATTGAGTTTGAGGAGTGCAACACTGCCATTGTCACAGAAGGAGCGAAGCCACGGAAGAGAAAAGCATTCGCGATACCGGGCCGAAGGAAAGACAAGGACACGGACTCCACagagTCCACAGAAGCCGAATCAGTAAAGACTTCCAATGGAGCTCCCTCTGGCTACTATGGGAGAATAGATTTACAGAACGCTAATGTTCCACAAGTTGATGAGGAAGGTTTCTGCATCAAGCCAGAGATCAACGAGAACGATATCCTGCATCATTGTGCCCTAGTGCCACCCATAGTGCAGCGCAATCACTACCCATAAATGATGTTTGGTGTTTCTGTGAAGACCAGCTCCTTAACTCTTTACAAACATGCCAAAGACAGCACTTTCTACTCCTCGAGCGACTCGGACGACGAGGACGAGCCCAGGCGCTTCCACGTGGAGATCAAACCGGTCCAGCCCAACAACGGGAACCACCAGGCGCTGTCCTCCATCGATGAGCTGAAGGCCACGATCAGCAACATCACGCTGTCGCCCTCGACCTCGgGTCAGCTGAAGAGGAACTCATCCAGGCTGTCGGGACTCTATGCTCAGTCTCCCGGAGACTTGCAGGGCCCACAAGCGTTTGGCGACGAGCTGGCGAGGTCCCGGCTGCAGGCCTCCTATAACGACAGGCGGGTCAACAGCGACCTGCTCTCTCTGGACCCTCTGTTCGGCCCCCCCCTCGATGCCTCATCCTCCGCCGTGTCTTCATCCGCAGCGGACGTGCTGTTGCACAAGGAGGGCTCCTCTCTGCCCAGTTCTCCCAGTGCCTCGCCCTGGAGTTTAGTGGATGAACCCTTCCTCGGACTGCAGCCACTTTCATGCCCCAAGAGCCCTTCCCCCGACTGCCCCCTCGTCCACATCCCTGCGGAGCCTTCTCCCAACAGCCTGGACATCCTGTCCTCCATCTCGTGGTCTCCGAGTCAGTGGATCTCGTTCAGCGAGGAGCTTGTCCCATGCCGACGGCTCAGCGCCAGTGCGGAGGAGCCCCCGAGACCGCCGGCGCCGGCCCACCGCAGCTCCCCGGCCACTCCGGCTTTCGCGTCTTCTGGGAAGTTCTTTTCCGATGACCCTGGCGACCCGTTTAACATGGTTGCGCGCCAAGCGAGGGCCAAGCTGCTCGTGGAAAGGGCAAAGCTGTTGGTGGAAGAGAGCGCCGGTCACGCTCGCGTTTCTCCTGCTCTGCTGGATGATGCGCTCGCACCCGATCTCAATCCTGTAGACAACGTGCCTCTGACCGCCAGACCCACCACACCTCTGGCCTCCGGGACCATCGTGCCCCCCCCGCGGCCCTCCTCCAGACCAAAACTCTCCGCAACCAAACTGGCCGGCATCACCGAAATCGCCAGGCCATTCAGTCCACCAAAAAACTGCAATGCCAGTCCTCCCCCTGCACCCCTGGCCCGTGCCGAGAGCTCCTCCTCGCTGTCCTCGACTGCCTCCCTCAGCGCCGCCAACACGCCCACTGTCGGAACCTCGCGTGGCCCCAGCCCCGTCAGCCTGGGCTCCCAGGACTCCCTGCCCATCGCCGTGGCCTTCACCGAGTCCGTTAATGCCTATTTCAAAGGCGCGGACCCTTCAAAGTGCATTGTCAAAATCACAGGCGACATGACGGTGTCCTTCCCCAGCGGCATCATCAAGATCTTCACCAACAACCCGTCCCCCGCGGTGCTGAGCTTCCGGCTGAAGAACACCAGCAAACTGGAGCAGGTCCTGCCCAACCAACAGCTGCTGTTCAGTGATCCCTCTCAGAGCGACTCCAACTCCAAGGACTTCTGGCTGAACATGCAGGCCCTCACTGCCTACCTCAGGAAGATGTCTGAGCAGAACCCGGCCGTCTCCTACTACAACGTTGACATCCTGAAGTACCAGGTCTCCTCCAGCGGTATCCAGTCCACTCCGCTGAACCTGGCTGTGTACTGGAAGTGCTCCCCCAGCACCACAGACGTCCGGGTGGACTACAGATACAACCCGGAGGCCCTGCCGAGCCGCGCCTCGCTGTCCAGCATCCAGGTCCTGGTGCCAGTGGACGGCGGCGTCACCAGCATGCAGTCGCTGCCGGCGGCCCTCTGCGCAGGATGCGTGAAGAAGCGCTTCTGCCTGGAGGATCGGTGTTCCGGGTCCCTCAGGGCGAAGTTCGAGCTGTCGGAAGGACCCAGTAACCCGGCCACGCTGGCTGTGCAGTTCTTCAGCGAAGGACACACCCTGTCGGGGGTGGAGATGGAGCTGGTCGGGACCGGATACCGGCTGTCCTTGACGAAGAAGAGATTTACAACAGGGCGCTATATGGCGGACTGCTGACGGCAGAGCGGTTCCATCACAGAAGCACAATTTCTCTAGTCAAGCGCCGCTCCGTTTTATTTCGTTTCTCCTCTCGGTTCGGCTTCAATTACACGTCTGAAGGGTTAGgcaataattatgttttttctgtacatttttgaaacaactttacatatttaaatgcaccTTTTTGGAAGAACCAATATTTTTACTACATAAATTAGCACTGATATGATTTTGAACACTGTTAAAAGAGAACTTAACTCGGGCTGTCAGGACATTTATAAACTTCAGAATCTTTCGTAAACTTCGATTTGCTCAGACTTTTATAAAGTCAACAGTAGGGTTTGTTTCATGTGTACAATTAACAGTTTGTGTATTCCTGGTATATTGGACTGTATGCGCCTGTAAACCTGCACTAACCGCCTGTGCTGCCGCGGGGAGAGGCCTCCGCTCTGTGCCCTTCGTCCTGCAGAGGAGAAACAGAGCGACGATGACCAGCGAGGACCACGGATGTCGCCGCGTCTCCGCCGCGCTACGAGAGCCCGGCGCTTTGGGACGGCTCAGTGTCGTATCGGTGCCAATCTGGCAAACCAGGTGAGAGGCGGCGCTGGTCGCAGTGAAACCTTCGTCGGCGCAATTCGCTCTTGTGTGCACACCGATGGCGTTCAGTAGCAGCTGCGAGGGAACCCGCCGTCatgcctcctctcctctctcagtcCGGTCCTCTTCTCTGTGCCTGACCTTCTGTCCTTCCGGAGGCCGATAGAGCTCTTGACTTCTAGTGCGCTATGAGAGCACAGCGTGACTTCTGTGTATAGTGTCCTTTTATACTCTGCTTATTGACTTGGATGTTGAAGGGAAATGCAGGACACTGACGTGGAGTTTGAATTTGATCCTGGTGGTCACGTGCCGCCCTGCGTTTCTCCGCAGCCGAGGCAGAGCGGCGTTTCTCTTCTCGTGACGCTGTCGACAGCTGGGCCTGTCGTCCGGTTTCTCCTGACTGCCTTCGTTACTCATAAACGACCCAGAGACAAACCCAGCCGCCTTATTGACCAAAAAGGGCCTCTTTGTGCCCAGGTGTGTCTCATTAAGTGTAGATACAGTCTTAGATCACAGAGGAACACCTTGCCTGTCAGATTTATTTAAGATCCATATTCTACATGCAGGTGTAATTGTTTATGAGTTTTACAGTGAAATGGAGAAATGTCACTCTGAGTAAAGAGAGTCCAGGTCACCTCGAGCAAAATTCAAACTCCATAGACTGTATTTACTATAACATGTATTGCTGTAAAAAGGGTAATGCTTACtaacaatatttgtaatttattgtatgATAATTAATCTTCCTAATTGATGTATAATTTTGCTTACTTtaatacactttatataaataataataatgtagcatAATCCCCACTAAATGAAACATTCAAactcaaaaagaaaaggaaaacgggaaaagaaacacatttcagaggAGGGTGGGTTAATGAAACCATCAGGGCAAGCTGTATGTGCGTGTATCTGTGCGTGTATGCATCTGTGCATGTCTGTGCGCATGtgagagtgcatgtgtgtatctgtgtgtgcgtgtgtgtatgtgcatgcatgtgtatgtatgtctgcGTGCGcgtgcgcgcgtgtgtgtgtgtgtgtgcatgcatgcgaGTGAGGCAGTCTgtttagtctgtgtgtgtgtatctgtttagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatgcgtATGAGTGAGCCAGTCCgtttagtgtgtgtgagagtgggtGTGTCTTGGCaccacattttaaacacacagctCTGGTTGGGTGTTGTTGTGTAAACTGGTGAAGATGGAAAAAAATTGTCACAGTTTTTACACGACCGCCTGCAGAAGAAAACCCCGTCCTCCACCCATCAGTGCCGTCGGCACCCACACTACACTTGTTCAGTTCAATAATGTCAATGCACAGAAGACGGCTATCGTCATAAATTGTATCCCTGCCTTAatgctattgttgttgttgttgttgttgttgttttgttttttgtattttatgggGGTTAAAAGCAAAGGCAATAATcatctttttcatgttttgtttttcaagccACTACAGGAAAATGCTACTATTGTGTGATTTTTGCTGGTTGGCCACATGCATGAGACGTGGGGGGCTTCACGGGGgtcttgtgtctgtgttgtaaaCTGGAATGGTTGTATCTGTGTTAGTGAGGTCCTCTCCGAGTCCTTCCCCTGTACAGCGAGGTCCCTGTCTCTTATCCCAGGAGTTCATTGTTGTTTACCAATCCAAATATGAGGCTGTCTCTCTCAAGGGCTTCTTTTCTAACCAGGTTTTAAACCGTTTCCTCCAGGTATCTGTCTTTCTAATGTGATTACTTTATCAGATAactcattttgaaaaacaaacacacaaattaaaccGGATTATAACGTCCGAGCACAAACAGGAGATTTGTGAGGCAGACGCAGAGCCGCTGCTCATATCCTCTGCCCCTGTGGCCTCAGAAGGGAGTCGAAGTTTCAGGTCTATAAAGGCTGACCGAGAGCTGTGGCCTTTCCTGCCATACAAGGCGCCTCCGTTACTAAACCTGGGTCCCCAGCTGCGATCAGGCATTATGGGATACCGGCCCGTCGGCTGAGCTATGTGTCAGGCCTCTGCACCGGTTCATGCGTTCATGTGCCTCTCTGCACACCGCAATGCTTCTGTTTCTTTTGGAATAGAGGGTCTGTCACTGAGGtcatgttttatgattttttatgAGGTGGAAGTGTGTGCTGGCAAACACAGGCCTGGAAAGAGAAAGTCCTCTTCGTGTTTTATCAGCTGGCCAGTGGGGAGAAGTAGTTACAGATCCTCCCGTTGTTGTGGTGGTGAAGCTGCCGTGTGTCGGGGTCGCGCAGTGCGCTGCCGTCTGGATGTGCTGGGAGGCCCGGCTCTTCTGTGCACAGAGCGGAGATGCATGCCCACAGGAActccatatgtgtgtgtgacgtATACCTAGCGAGCTGGTTCTTGCTTCCATACACCAAGTTATCCTTTCAAGATGCCTCTGAAACATCAGTCAATTGTCCGTGGGAATTGGAGCTTTTATGAAGATGTATTggttgtttgttaaaaatgtagTCAGAAGGTTTTTGTAGCCGACaaaatctgtatatttaaatgatttttcatgaaatgtaaattttacAATCTCTTTGCCACTTGTCCTCACTTTATAATTCAATGTGCctgtaataaatgtgta

Function

GO: NA

KEGG:

id description
K20042 FCHO; F-BAR domain only protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103581 lncRNA upstream 53562 40927179 ~ 40930030 (+) False G83001
TU103549 lncRNA upstream 150756 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 188036 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 206082 40776954 ~ 40777510 (+) True G82968
TU103507 lncRNA upstream 292114 40690895 ~ 40691478 (+) True G82940
TU103638 lncRNA downstream 95150 41115859 ~ 41116188 (+) True G83045
AMCG00010751 mRNA upstream 23108 40943453 ~ 40960484 (+) True AMCG00010751
AMCG00010750 mRNA upstream 81136 40894800 ~ 40902456 (+) True AMCG00010750
AMCG00010748 mRNA upstream 107014 40861675 ~ 40876578 (+) True AMCG00010748
AMCG00010749 mRNA upstream 138211 40832082 ~ 40845381 (+) True AMCG00010749
AMCG00010743 mRNA upstream 255293 40719299 ~ 40728299 (+) True AMCG00010743
AMCG00010756 mRNA downstream 12977 41033686 ~ 41036633 (+) True AMCG00010756
AMCG00010760 mRNA downstream 105291 41126000 ~ 41130780 (+) True AMCG00010760
AMCG00010757 mRNA downstream 116921 41137630 ~ 41146739 (+) True AMCG00010757
AMCG00010758 mRNA downstream 130695 41151404 ~ 41158268 (+) True AMCG00010758
TU103580 other upstream 53562 40927179 ~ 40930030 (+) True G83001
TU103506 other upstream 292742 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 428738 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 933777 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1134223 39848946 ~ 39849369 (+) True G82671

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060645 False 3379 mRNA 0.46 26 NC_007116.7 35126053 ~ 35201482 (-)