RNA id: AMCG00010760


Basic Information

Item Value
RNA id AMCG00010760
length 1576
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00010760
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 41126000 ~ 41130780 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGCCAGCCCACCCGGCTCTTCTGCTCTCTGCGCCGTCCTCCCACCGCGCCGCAGCTCTTGTAGGCTGTCGTCACTTCCGCTCCTCCCTCCGGCCACCATCTTGCTCCCCGCGTGTGCAGGTCAGTGGAGCCGCGTCGTCTCTCCGCACAGCAGCGCCGCGCTGAAGatgaAAGAAACAATCATGAATCAGGAAAAACTAGCTAAACTCCAGGCACAGGTCCGCATCGGCGGGAAGGGGACGGCTCGTAGAAAGAAGAAGGTCGTCCACAGAACAGCGACCGCAGATGACAAGAAGTTGCAGTTCTCTCTGAAGAAGCTGGGTGTGAACAACATCTCCGGCATTGAGGAGGTGAACATGTTCACAAATCAGGGTACAGTCATTCACTTCAACAACCCGAAAGTGCAGGCATCCCTGGCTGCCAACACCTTCACCATCACGGGCCACGCCGAGACCAAGCAGCTGACGGAGATGCTGCCCAGCATCCTGAACCAGCTGGGTGCAGACAGCTTGACCAGCCTGCGCCGCCTGGCAGAGGCTCTGCCCAAGCAGTCGGTGGATGGCAAAGCGCCGCTCGCTGCGGGAGAGGAAGATGACGACGAAGTTCCAGACCTGGTGGAGAATTTTGACGAGGCTTCCAAGGATGAAGCGATCTGAAGGTCACTGAAGTGGTTTCCCCGATTTCCACCGGCTGTGCGGAGctgctgttttgtatttgtgaccttattttgtaaatgttttttttgtactgttccCATATCCCCAGTCAAGTATGAAATGCCTACAGATCGTAACTATTCGAATGTTTGAGGTCCTGCATCTTTGCTGCTTCCCATGCATTATTGAAACCAACATCTTTGCAGCCTGGTTCAAGTGAACACGTCTGGAATAAAAGTTTGCATTTATCCAGTgcttactgaaaatgaatgtcCTGCTTTATTTACAGTTAAAATGACACCATTTATGCAGAGAATGCATACACTTCACTGGAAACTCCATTCGCAGCTTTAGGAAGTGATGTGAGACGTGGGAGTTGAATGACTGTTTCCATGGGAGGACATGGCCATGCCCTCAATAGACCAGACCCCCAGGGGGGCAGTGGTGTACTACATACCATGCCACCCGTTCAGTTCCCAGCCCGCCTCCTGGCCACGGGTCTGCTCATCTCTGCTGctctttttaaacattgttttaatatgaaaactCAGAAGCTAAAGCAGCAGGAAATGTTTTCTAGCTCTGAGGAGAAAATCTTGCACAGTAGTGGTGTGGAAAACAGTGTTAATGTCGGCTCACATTTCTGCTCTGAGAGCTGCTGTTCCTCCTGAACACCAGACAGTGGGGGCTATTACAGCTCCAACGTCCTTCAACAAAGGCCTGATGGccaataacaaacacacagtcGGCACACAAGTGTAAATGTTTGTGAACTACGGAGAAGGATACAGAAAGCAGGGGGTAGACTGGATAACTTTTAAATGCAATCCATCCACATTCAGTTTTCTGACAAGTACGGGACAACCGCAGCATCATTAAAGCCACACTGTCCTGGCAGACTACCCCCTccaaagcttt

Function

GO: NA

KEGG:

id description
K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103638 lncRNA upstream 9812 41115859 ~ 41116188 (+) True G83045
TU103581 lncRNA upstream 195970 40927179 ~ 40930030 (+) False G83001
TU103549 lncRNA upstream 293164 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 330444 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 348490 40776954 ~ 40777510 (+) True G82968
AMCG00010756 mRNA upstream 89367 41033686 ~ 41036633 (+) True AMCG00010756
AMCG00010759 mRNA upstream 105291 40983592 ~ 41020709 (+) True AMCG00010759
AMCG00010751 mRNA upstream 165516 40943453 ~ 40960484 (+) True AMCG00010751
AMCG00010750 mRNA upstream 223544 40894800 ~ 40902456 (+) True AMCG00010750
AMCG00010748 mRNA upstream 249422 40861675 ~ 40876578 (+) True AMCG00010748
AMCG00010757 mRNA downstream 6850 41137630 ~ 41146739 (+) True AMCG00010757
AMCG00010758 mRNA downstream 20624 41151404 ~ 41158268 (+) True AMCG00010758
TU103580 other upstream 195970 40927179 ~ 40930030 (+) True G83001
TU103506 other upstream 435150 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 571146 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 1076185 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1276631 39848946 ~ 39849369 (+) True G82671

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060638 False 954 mRNA 0.48 6 NC_007116.7 34987448 ~ 34993242 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_00537196_00539989.mRNA True 1007 mRNA 0.47 5 CI01000071 537196 ~ 540536 (-)