RNA id: TU100084



Basic Information


Item Value
RNA id TU100084
length 568
RNA type TUCP
GC content 0.41
exon number 2
gene id G80249
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 27556415 ~ 27557007 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gaaaaaagtatttgatcccctgctgattttgtacatttgcccactgacaaagaaattatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaaaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcatctcgtggagtttcaatgatcatgagaacggtgaggaatcag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100068 lncRNA upstream 267559 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 353214 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 477911 27078289 ~ 27078504 (+) True G80210
TU100041 lncRNA upstream 639576 26916541 ~ 26916839 (+) True G80208
TU100040 lncRNA upstream 640280 26915734 ~ 26916135 (+) True G80207
TU100103 lncRNA downstream 238503 27795510 ~ 27796290 (+) True G80264
TU100177 lncRNA downstream 379159 27936166 ~ 27937054 (+) True G80331
TU100212 lncRNA downstream 464467 28021474 ~ 28021684 (+) True G80362
TU100254 lncRNA downstream 649314 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 704520 28261527 ~ 28262672 (+) False AMCG00010407
AMCG00010379 mRNA upstream 8407 27525520 ~ 27548008 (+) True AMCG00010379
AMCG00010381 mRNA upstream 46582 27508855 ~ 27509833 (+) True AMCG00010381
AMCG00010382 mRNA upstream 89793 27461042 ~ 27466622 (+) True AMCG00010382
AMCG00010380 mRNA upstream 278662 27264785 ~ 27277753 (+) True AMCG00010380
AMCG00010378 mRNA upstream 634540 26917897 ~ 26921875 (+) True AMCG00010378
AMCG00010385 mRNA downstream 153606 27710613 ~ 27723371 (+) True AMCG00010385
AMCG00010383 mRNA downstream 206573 27763580 ~ 27775353 (+) True AMCG00010383
AMCG00010390 mRNA downstream 229430 27786437 ~ 27795327 (+) True AMCG00010390
AMCG00010384 mRNA downstream 253401 27810408 ~ 27813573 (+) True AMCG00010384
AMCG00010395 mRNA downstream 294555 27851562 ~ 27867176 (+) True AMCG00010395
TU99961 other upstream 1161893 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1530112 26012484 ~ 26026303 (+) True G80014
TU99797 other upstream 1560001 25992558 ~ 25996414 (+) True AMCG00010366
TU99599 other upstream 2719027 24833109 ~ 24837388 (+) True AMCG00010333
TU99126 other upstream 4853006 22699809 ~ 22703409 (+) False G79475
TU100109 other downstream 312450 27869457 ~ 27874931 (+) False AMCG00010393
TU100171 other downstream 349490 27906497 ~ 27906829 (+) True G80326
TU100533 other downstream 1937610 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 6346808 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 7144431 34701438 ~ 34707394 (+) True G81496

Expression Profile