RNA id: TU100212


Basic Information

Item Value
RNA id TU100212
length 211
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G80362
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28021474 ~ 28021684 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcccttgttctcaattctacacttttgacaatataccctagtattctgtttgccttttttattgcttccccacattgtttggatggagaaagtgaggagtccacatagactcctaggtctttctcatacattacttcatctagttctattcctcccatagtgtaattatagtggacatttttcttacctgcatgtaataccttgcacttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100177 lncRNA upstream 84420 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 225184 27795510 ~ 27796290 (+) True G80264
TU100068 lncRNA upstream 732618 27288579 ~ 27288856 (+) True G80235
TU100050 lncRNA upstream 818273 27203001 ~ 27203201 (+) True G80217
TU100043 lncRNA upstream 942970 27078289 ~ 27078504 (+) True G80210
TU100254 lncRNA downstream 184637 28206321 ~ 28207268 (+) True G80392
TU100289 lncRNA downstream 239843 28261527 ~ 28262672 (+) False AMCG00010407
TU100364 lncRNA downstream 703323 28725007 ~ 28725281 (+) True G80468
TU100365 lncRNA downstream 749543 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 856140 28877824 ~ 28878359 (+) True G80487
AMCG00010394 mRNA upstream 7984 27958707 ~ 28013490 (+) True AMCG00010394
AMCG00010392 mRNA upstream 87901 27919578 ~ 27933573 (+) True AMCG00010392
AMCG00010396 mRNA upstream 122976 27892610 ~ 27898498 (+) True AMCG00010396
AMCG00010393 mRNA upstream 146553 27869439 ~ 27874921 (+) True AMCG00010393
AMCG00010395 mRNA upstream 154298 27851562 ~ 27867176 (+) True AMCG00010395
AMCG00010402 mRNA downstream 134572 28156256 ~ 28169012 (+) True AMCG00010402
AMCG00010404 mRNA downstream 169898 28191582 ~ 28206181 (+) True AMCG00010404
AMCG00010401 mRNA downstream 188328 28210012 ~ 28212808 (+) True AMCG00010401
AMCG00010403 mRNA downstream 194172 28215856 ~ 28232465 (+) True AMCG00010403
AMCG00010400 mRNA downstream 211260 28232944 ~ 28242085 (+) True AMCG00010400
TU100171 other upstream 114645 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 146543 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 464467 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 1626952 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 1995171 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 1472933 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5882131 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 6679754 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6990631 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 7448651 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile