RNA id: TU100364


Basic Information

Item Value
RNA id TU100364
length 275
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G80468
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28725007 ~ 28725281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtggggaagcaataaaaaaggcaaacagaatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100289 lncRNA upstream 462335 28261527 ~ 28262672 (+) False AMCG00010407
TU100254 lncRNA upstream 517739 28206321 ~ 28207268 (+) True G80392
TU100212 lncRNA upstream 703323 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 787953 27936166 ~ 27937054 (+) True G80331
TU100103 lncRNA upstream 928717 27795510 ~ 27796290 (+) True G80264
TU100365 lncRNA downstream 45946 28771227 ~ 28775463 (+) True G80469
TU100387 lncRNA downstream 152543 28877824 ~ 28878359 (+) True G80487
TU100390 lncRNA downstream 174888 28900169 ~ 28994462 (+) True G80489
TU100392 lncRNA downstream 230991 28956272 ~ 29023473 (+) True G80491
TU100391 lncRNA downstream 336503 29061784 ~ 29064373 (+) True G80490
AMCG00010414 mRNA upstream 142082 28561146 ~ 28582925 (+) True AMCG00010414
AMCG00010411 mRNA upstream 325616 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010410 mRNA upstream 335838 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010409 mRNA upstream 353375 28339880 ~ 28371632 (+) True AMCG00010409
AMCG00010408 mRNA upstream 390131 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010424 mRNA downstream 322905 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010423 mRNA downstream 370056 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010421 mRNA downstream 498035 29223316 ~ 29228983 (+) True AMCG00010421
AMCG00010420 mRNA downstream 524171 29249452 ~ 29251205 (+) True AMCG00010420
AMCG00010422 mRNA downstream 547930 29273211 ~ 29283590 (+) True AMCG00010422
TU100171 other upstream 818178 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 850076 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1168000 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 2330485 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2698704 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 769336 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5178534 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 5976157 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6287034 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 6745054 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile