RNA id: TU100365


Basic Information

Item Value
RNA id TU100365
length 3331
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G80469
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28771227 ~ 28775463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAATTCCAtagatgtttttaataaatttagACACAGACtagaaaaaacagacaaaatgcatgttgtattaaagaaacaatttaaCACCTAGCAAcaggtagttttttttttgtttttttttgttttttagcgtacacatttttaaatttatttataaaatagtaTCTCGACCAACTATTCAATACCAAAGCATAACCAGGAGTTCCTACTGAATAAATTTTGCCGTTTCATTGTTACACACAGTAGAAAACCTTGGATGAACAGAGCAATGCAGTCTAAAAATGTCTTCAGGTAACAATAAAATTGGTCAAAGTTAGGTATGATGTTGTGGATAGTCACACATTGACAGGCATATGCAGAATCTTTAACaagacatatttaattatttagcagattacattttttgtttttacttaaaagATTATGcaaaaaaagtaacaaacatTTTTTCCTCTGTACACCTATTAAATTGAATGGCTATGCACAACTGATAACAATGCTTGTTTAGTTGCTTAGTGCTCTAGGTagttaacaaatataaattatttttaatgaaagagtatttatattgtatgtcCCATTTACACAGAACTCTTTCTAGtccaattaaaattgaaataacttTCCCTGATTCTAAAAAGTTATTTACGAAGAATGGGGTCTAAAATGTTTCAGGGTGTTGTCAAGAGGGAacagtgtttattaaaaataaataaaaaaaatgaataaggCAAGATTTGAGAGAGAATATAAAACTATCCTCTTGAGGGGAGAGAATTACACAGCTTCACTGATACATTACAATTTGGATAAATAAATGGCACTAGTGGATAAGCTGATATTGTCTAAATACACTGGAAAAGTGGTGGCACTTGAAATGGATGTAACCCTGTTTAAAAGACAATAGTGCTGAGCAATTAATCAGAATGTGATCTGCATTAGGATCAATGTCAAAATCAAAAATGCTTGAAActtatatttcaattacattgtGAATAGGAACTGTGAGCAAACAAAGGAAAGTACCAATGTTCATGGCAGCATTGGACTTAAAAGTAAAGCTAATGCCTCATCTATAGGTTGCCCTCCAAGCAATATACTATTTTTAATAGCTTGGACAGCTGGTGCATAAGTAAAAGtgtatcatttaaattaaatgcaattcttCTGTTCATTGGTGTAATATTATTGTCATACAACTAAAGTAGTTTAAAACTTATAGATTttaaatagtaatattaatattgcttaATTGGCATTGGcttctcataaaaaaaatatatgtattgtattttttatatataaaaatattaaaatctatgATGAATATTTCTTAACATAATTATCAATTATCAATCATCATgataataatgcaaaatcatTAATTGCTCAGCAATGTCTGGTGCAGAGCCATGCCACTGAACAGAGAGTTCTCCTCACAGGATTCTCCAACACAATTTCGTGCATATTTGGAGACCACTCTCTGTTTCCCTAATCTTTTAATTGTCTTTTCCACCCATCTGTTTTGCTTCAGttcttttctttcccaaacAGATGATGCCATGCATGTTATATCCAATAGTGTATTCTACATATTTGTTAAATTTCTTGCAAGCATCTTTGAGACATAAGACTTAACCTCATTGCTTTGTATTTGCACAAAAAGTCTGtatgttattttcaaatgagGAACATCAATAGATTAGTATGGTTTTCACTTCTTAGCTGCAAGCTGTGCTAGACTTTTTGTACATAGGCAACTGGGCCCAGATGGGATTAAAATCATTGCAcaaatttgtgtatatatatatatatatagtattcacCATATGTGTTCGAGTTTATAAATTATAGAGATGTTTTTATTCACATAATGACCAAAGAGCTTGCAAAATTCTCATCCATGTATTAGAACTGAATGCTAAATACTGCAAAATGTTAATTActattatcaataataaacaatacaatgactTTGATCACTGCCCCAGGTCTCTATAGCCCCTTGTTGCCCCTGCTGCCATGTTAATAACCAGTTTTTACTATTTCAAAAATGAAGCTCGAATTTAATCACAAACCAATAACTCTGAAATCAGACAATctgcaaaaatgtattgcagtgcCATTTCATATATCACTGCAAATTGTtgcaaaaaaagaataaataaaaaaagaaaaacagctacTGTTGCATCAGAACTATATACATGACAAGTTTTAGTATCAAAATCCTTCAACATTGCAATATTCTCCAAAGCTTTTCATGACACAAAACACCAAGAACTCAGAATAAAGTTGTCTACCACTTCTGGAACTCAAGTAGACAAGTCTATTGTAAACTGGATATTGTGGCTCTATATTCTAATAGCAAATGGAGAACACCTAAaccaatacaatatattattaccTATATTAATGGTTTGATCTATAGCAGCAAAGGCACTGTACATCAGCAGATCCACAGACTTGGTTCTTGTAAGCATTCAATGCACAGACTgtccaaaagaaaagaaaaatgttatttacatataaCTGGCAAAGAATAAGCGTGTCTTTTGGAAAGAACTCCAATGCACATCCCAAAACATATTGGCCAACAATCCATGACAGGAGGACATAGGCATTTATCTTGTTATCTTCATTGACTTCTGTAATCCTGAAGCTGGAGAACAATTGGGTTGTGGGTAGTTGCCGGAGTTCCATGGGCATCAGtgtaatacaaaaaagcaaTCGATCGGCGTGCCTTTCCTCCTGCTTACACTGCATTGTCCATGCTCTTTAATAACTGGAATGTAATCCAAATGGGCATTGCTGTATAAATATTTGGCTTTTGCAAGAGAACAGCATTTCCTGCCAATGGCTGGAGATAATACCACCCTTCTGCAAACTTCCATGTCAACTTATGTGTCAAGCAGCTGCATCCAATTCCATTTAAACATTGGTTAGAAAAtctccttaaaaataaatagcttaaaTCTACTGTACAGAGTCAATGTGTTTGCTTCATGGAGCGTAagcttggtttgttttattagtcATTTCTGCTTTGAAGATTTGGTATCAAGTGTTAACTGTACATCCATAATATAGTAGTAAAATACGTCAGAGTTGATGTGGTGGattcttgtttttatacaaattcTTGTTTCCGAAAGTCCAGTCTTAAAGAACAAATAGAACAAAGTGCTTCAGCAGGAGTCCTCTTTGTATTCAAATCCTTTATCTAATAAATAACTTCATAGACTGTGGCCTTCTTGTCCCCAGAGCCTGTGACAATATATTTATCATCCACAGAGATGTCACAGCTGAGCACAGAAGAGGATTCCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100364 lncRNA upstream 45946 28725007 ~ 28725281 (+) True G80468
TU100289 lncRNA upstream 508555 28261527 ~ 28262672 (+) False AMCG00010407
TU100254 lncRNA upstream 563959 28206321 ~ 28207268 (+) True G80392
TU100212 lncRNA upstream 749543 28021474 ~ 28021684 (+) True G80362
TU100177 lncRNA upstream 834173 27936166 ~ 27937054 (+) True G80331
TU100387 lncRNA downstream 102361 28877824 ~ 28878359 (+) True G80487
TU100390 lncRNA downstream 124706 28900169 ~ 28994462 (+) True G80489
TU100392 lncRNA downstream 180809 28956272 ~ 29023473 (+) True G80491
TU100391 lncRNA downstream 286321 29061784 ~ 29064373 (+) True G80490
TU100429 lncRNA downstream 333734 29109197 ~ 29110019 (+) True G80519
AMCG00010414 mRNA upstream 188302 28561146 ~ 28582925 (+) True AMCG00010414
AMCG00010411 mRNA upstream 371836 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010410 mRNA upstream 382058 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010409 mRNA upstream 399595 28339880 ~ 28371632 (+) True AMCG00010409
AMCG00010408 mRNA upstream 436351 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010424 mRNA downstream 272723 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010423 mRNA downstream 319874 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010421 mRNA downstream 447853 29223316 ~ 29228983 (+) True AMCG00010421
AMCG00010420 mRNA downstream 473989 29249452 ~ 29251205 (+) True AMCG00010420
AMCG00010422 mRNA downstream 497748 29273211 ~ 29283590 (+) True AMCG00010422
TU100171 other upstream 864398 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 896296 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1214220 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 2376705 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2744924 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 719154 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 5128352 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 5925975 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6236852 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 6694872 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile