RNA id: TU100390


Basic Information

Item Value
RNA id TU100390
length 469
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G80489
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 28900169 ~ 28994462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgtaaaaaaaaaCAGTCCTGTAGTAGcttattattaaatgtgaacCAGGTGTACAGAAAGGCAAGTACAGAGAATGCATCAAAATGATAAGGCACAATAAccagaatattaaaaataaacactcaggAAGCAGACTACAGCAAGTCCCTGCTGTGGCATTATAAATGCAAACCGATACTTTAGAATTAGTGTTCTCAAGAATGAGGTCTACTCTGACTCGAATGgatataaatgtaatcaaatccagtttgtttttattatcactCCACATAACTCCTAATGGGAGTTACAAAATCGCACGATGTAACTAACTAGGTCTTGTGTTTCACAAACTCGTGACTTCATTCTTCCAGGTGTCGTTCGTCTAGTTTTGTGCTTTCATAAACTGCTTCATGAAATCGGCCAGCGTCCTCGTCTCCTCGACTGTAACAGCGTTATACAGAGAGACTCGGATTCCTCCTACCGAC

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100387 lncRNA upstream 21810 28877824 ~ 28878359 (+) True G80487
TU100365 lncRNA upstream 124706 28771227 ~ 28775463 (+) True G80469
TU100364 lncRNA upstream 174888 28725007 ~ 28725281 (+) True G80468
TU100289 lncRNA upstream 637497 28261527 ~ 28262672 (+) False AMCG00010407
TU100254 lncRNA upstream 692901 28206321 ~ 28207268 (+) True G80392
TU100391 lncRNA downstream 67322 29061784 ~ 29064373 (+) True G80490
TU100429 lncRNA downstream 114735 29109197 ~ 29110019 (+) True G80519
TU100431 lncRNA downstream 121370 29115832 ~ 29118058 (+) True G80521
TU100492 lncRNA downstream 303696 29298158 ~ 29303550 (+) True G80567
TU100505 lncRNA downstream 357692 29352154 ~ 29357030 (+) True G80580
AMCG00010414 mRNA upstream 317244 28561146 ~ 28582925 (+) True AMCG00010414
AMCG00010411 mRNA upstream 500778 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010410 mRNA upstream 511000 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010409 mRNA upstream 528537 28339880 ~ 28371632 (+) True AMCG00010409
AMCG00010408 mRNA upstream 565293 28303292 ~ 28334876 (+) True AMCG00010408
AMCG00010424 mRNA downstream 53724 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010423 mRNA downstream 100875 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010421 mRNA downstream 228854 29223316 ~ 29228983 (+) True AMCG00010421
AMCG00010420 mRNA downstream 254990 29249452 ~ 29251205 (+) True AMCG00010420
AMCG00010422 mRNA downstream 278749 29273211 ~ 29283590 (+) True AMCG00010422
TU100171 other upstream 993340 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 1025238 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1343162 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 2505647 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 2873866 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 500155 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 4909353 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 5706976 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 6017853 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 6475873 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile