RNA id: TU100391


Basic Information

Item Value
RNA id TU100391
length 2590
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G80490
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29061784 ~ 29064373 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTTGTAATCATTAATTTTGGCAGATTGAATGTGCtgtattgaaaatatgtatcaatgtaattgtattgtacGTCTTCTAGCTAAATCACATTATGAATAATGTTATTTACTTTAAGAGAGGAGAATGTACATTTTTGCGAGTTCATGTCTCAACTAGgatcattagtattattttttcgCACTTTGATTTTCAAATTTTGCTATCATACAGAGCAGTATACGAGTAATTACAGTAGATGTTAGACATTTCATAaacttaaatttgtatttaaaatttccCAATTTAAAATACGGGGACCTGTCTAGACCAGAAACTGGTTCCACAAATAGAGCACTTGCCATTTTAATGGTTTCTTCCAGAGTAAACCCTGAACATGTACAATACTTCGGTTATGTTGCAGTAAATGAAGGCAATCTGGTTCTGAATTCAgagcaatacattaaatgtgaggacacgtgtgtgcatttatatacagtattgtagTATGTCCTTCCTGATTCTGAGTATCACTTTGCTAATGAAATCGCTATGTGCACGGAATTGGTGCCTATAAATGAGATCATCTCtgtatcaaaaaataaaataaagatttcatCTGCTTCACCTAACTGGGTGAACTTCTTAAATCAATGACGAGTCAGTACAAACATGAACTGCCTGTAATGTTATGGGAGGACTTCGTCACCACTTTTATACCTGAATTATGCTACGAACATTTACAGGATTTGTTTCAGTAGCTCATTTTCAGAATGTATTCCTTTTCAttaaactttatatttattataattattgtacatATTGCCTTATAGAATTAGTTGTGCCTGAAAAACTGAAGGTTAAATAATCCTCCTCACTTAAAACACCCTTTATATTGAATGTTGCTATTAAActgtacaattacatttgtttcctaAATATTGCGGTGGGGAAAAAATCCAAACCAAATGGCAGTTTGGAaagatgaagagaaagaaagtaatattaataatgtagcgttttaactttgaaaatgaaaatgtctgtgtGGATAGccctattttcttttctttgttttatacatgggttacacacaTCAGGGAGTAACAGTTATACAACCAATTCCTTACTtctgtgtgaaaaataatattttgttagaCTGAAATTCATAAGTAAGTTGATTTGTATTCTGAAGTAATGTGTAGctgttgtgtaaaatgtaactCTTCTGAAGCAATTACATATTCTGATTGGAGCTCCACTCTATACAGTGCACTGAGGAATGTTAAAGGTGCATGCTTAAGGATTTTTAAAACCAGTCCAAAAGCCCCTTATACAATCTATTACCTTTTCCCCCATTCCTGCATTTCACTAGTAAGTTTATTGAAGGACACTTTGCCACacaatgtactttttaaaagtctttTTACTTTAGTGTGCTtctccatttacattttctggtcTGATAGTATTATGTAATAGAAGTGTAAGCAACGGATAACGTGCAGGTGTATTGCTGTGAGTATAACACTGTTtgaccttttaaatatatatttcatatagtTTATAGAAGTTACTTCAGTGAAATATTTTGGTAAATCTAAAGTAAGTACTTTTAAAAAGAGGTAAGAATTAAGTTTACAGACAACGTGGCCTAAAAATTACAGGTTAGTACTCAATTGCATACAAAAGATTGCAATGCATAAAACTTGATACTAGAATAGACTTTTTGCCATATTTGTATTAAGCAAGATGAATGGTTGCCACCTACTTGTTCTGCAAATGTAAAATCTGATTGAGCTCTTAAAGTGAGAACCTGTAGGCTTGTAATAgcctacaaaataaatgtttattttcatcactGCTCTGTCGATCAGTCTATGATGAATTTCACCATGTTGGCACTGGGACCAGAAATGATAAGAAAAGTATAAACTTGAACGAAAAATGCTTGCTTGACATTCACGGTTTTGAATGTGGAACTGTAAGTACCACTTTAAGCATGGTTCCTATGCATTCAAGACAACACTACAGTAgtatttttgggggggggaaagTGACCAAATGCTGCAACTGAAGAATCatgactgtttattttttatttttttggtaatgCCTTAAGCAGCGTTTAAGCAGCAAACCTTCTTTGCCACATAGAAACATGTAtgttgaatgtatatatataaacacagataGTGTGCCACTCTGCCTCATACATGATGCGAATAGTTAACAAAAGGTTATGCAAGACATGAACCAGTGGCTATATCCTGTTTCTGTTTGTCATATCCTATATGCCAATGTGGTGGAATTCCTAACTAGACCtgcatatgtatttgtatttgtattatttgtttgaaagaTGAAAATTTAAATAAGAGTAACATGCAGTATTTCAGATGAGAAAAAAGGGTTTTACAACTGTTCAAATGCATGTATTGTCTGTTGTTTTGGGGAAGGGAAAtcattttgggaaaaaaaacaaaaaactactaCGATTGTGGTATAAACTGCCCCAAAATGGTATTGCTGGttaaaaatatagtaatttTTGGCCATAAGTTTGTACTACTTTGCATTCCTTGAATTGTGCTTCTCTCAAAGTATTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100392 lncRNA upstream 38311 28956272 ~ 29023473 (+) True G80491
TU100390 lncRNA upstream 67322 28900169 ~ 28994462 (+) True G80489
TU100387 lncRNA upstream 183425 28877824 ~ 28878359 (+) True G80487
TU100365 lncRNA upstream 286321 28771227 ~ 28775463 (+) True G80469
TU100364 lncRNA upstream 336503 28725007 ~ 28725281 (+) True G80468
TU100429 lncRNA downstream 44824 29109197 ~ 29110019 (+) True G80519
TU100431 lncRNA downstream 51459 29115832 ~ 29118058 (+) True G80521
TU100492 lncRNA downstream 233785 29298158 ~ 29303550 (+) True G80567
TU100505 lncRNA downstream 287781 29352154 ~ 29357030 (+) True G80580
TU100527 lncRNA downstream 378737 29443110 ~ 29457978 (+) True G80595
AMCG00010424 mRNA upstream 1744 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010414 mRNA upstream 478859 28561146 ~ 28582925 (+) True AMCG00010414
AMCG00010411 mRNA upstream 662393 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010410 mRNA upstream 672615 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010409 mRNA upstream 690152 28339880 ~ 28371632 (+) True AMCG00010409
AMCG00010423 mRNA downstream 30964 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010421 mRNA downstream 158943 29223316 ~ 29228983 (+) True AMCG00010421
AMCG00010420 mRNA downstream 185079 29249452 ~ 29251205 (+) True AMCG00010420
AMCG00010422 mRNA downstream 208838 29273211 ~ 29283590 (+) True AMCG00010422
AMCG00010425 mRNA downstream 250927 29315300 ~ 29317556 (+) True AMCG00010425
TU100171 other upstream 1154955 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 1186853 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1504777 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 2667262 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 3035481 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 430244 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 4839442 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 5637065 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 5947942 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 6405962 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile