RNA id: TU100431


Basic Information

Item Value
RNA id TU100431
length 1832
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G80521
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29115832 ~ 29118058 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTGTTTTGAACTGAAAGAGAAAAGTTTGATCACAGCAAACTCCATCTCTACAAGAAGACAGTAGATTCAATTATGTCTCAAAAGGTtgtgaaaacaagaacatatttttaaactgccATGAAAGATTTCTCCTTTAGCATACCAAGGCCCATTCTTCACATGGCTATCGATTGGTGTATTGATTTAAGAGGAACAGATCATTTTGCAGACTACACTGGAATACAATTACCTTTGCTTCTATACGCAACCGCCTTCCTTCCACAATCATTGGCTCTTTGGTAAACTCATCGAAACAGTACTGCCACTCACAAGTCAGCTGCCCAAATGTCCCTTTCGTTACGAAGAATATGCAgcTTTGTGATCATGAAAAAGTCTGAATCATTCACCTTGGCGTGGGCAAAGTACCTATATTTGGCAAATCTTCCATTTTCAATTCTCTGtataaaagcaaagaaaagacATGATGACAATGATGTCTCACAAAAGATTAGTTTCATACTGAAGACTAGAAAAGCAAGAGAGGTATTACCCAGTTGTGAATCTGTCCCTTGGGAGTACAGTACTGGAATGTTAGCATCTTCATTACAATCAGTCGCTGAAATTTGCTAGCTAAAATATTGTGGTGAAGTGAGTAATAGAAAGCATTTCCATATTATATTTTCCCTTCCTTTAATAGTTCACATGTTGTTTGAAGCTCACAATTTAAGAAACCCAACAGTATTACTTTATATTGAAATAGCAGGCCCCAAGAgacttaaatgtgttttttgttttgtaagaaaaaaaaaaaaaagaaagaagaccTTTATAAGTAACTGTTTCATAGATAATctactgtgtttttctgtgcagaaatattatttttggttttgcgCCACAATATTCCAGCTAATTAAGCATTGTCAGCAACACAATAAAGATGAAAAGTTCTCAAccaaaattgtataaaatatattggcCAGAAAATACCAAATCAACATCTTCTGACCTGTAATGTTGTAAATAATTTGCTTGgggttttaaaaaaaagcatttacatGTCAATATGACATTAATATCCACAGTACAAAACCTCCAGTGTCAAATAAAGCATGTACTGAAATTACATTATCAGACTTGAAAGAAATGGTCTCACATAAGGTTAAAGCATGGTTTccttagaaaataaaaaaaacaagcgaAACAAAACTTTGATGTTATGAAATTGTGTTTCGTTACACAGTTTAATCCTTGAGACGCATGCCCTGAGAACAGCAAATGAttaaaaagcagtgttttaaaatacattttattagttcttcacacacaaatagatatACGTATGAACAGAAAATACAGCATGGACAGCACATAAATGAACAGAAGAGCAGTGGCATGGCAATGAAGAAGGCAAAGggttctttaaaattaaaaatattttttaattaggtgTGAAAATAAGTGCTTATATTAGATTGTAGATATAAACCCCAGCCCAAggtaaattaaaatagattcaAATGATTGATTACATTAGATTGATTAGAATTGAACTCAATAAAGAATTATCACTGGTGGATATTTCTTTAAAGAAGCCCTTTGCGATTGGTGCAAGCTTTAGATCAGGACACACAATGGCGGCCACAGACTAACTGCATGACTAACAGCTACATTGACAACTAGGTTGAATGCATGCACTGCTAGCACTTAGCAATTTTATTCTAGCtgccatcatcatcatcatcatcatcctcatcatcacTGTCAGTCCTAATCCATTCAGTGTAGGCCATTCTTTTCTGCAAGCATAACaaaagaggaaagagaaaacataGCCAATGTCAGTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100429 lncRNA upstream 5813 29109197 ~ 29110019 (+) True G80519
TU100391 lncRNA upstream 51459 29061784 ~ 29064373 (+) True G80490
TU100392 lncRNA upstream 92359 28956272 ~ 29023473 (+) True G80491
TU100390 lncRNA upstream 121370 28900169 ~ 28994462 (+) True G80489
TU100387 lncRNA upstream 237473 28877824 ~ 28878359 (+) True G80487
TU100492 lncRNA downstream 180100 29298158 ~ 29303550 (+) True G80567
TU100505 lncRNA downstream 234096 29352154 ~ 29357030 (+) True G80580
TU100527 lncRNA downstream 325052 29443110 ~ 29457978 (+) True G80595
TU100535 lncRNA downstream 365233 29483291 ~ 29484341 (+) True G80599
TU100605 lncRNA downstream 653369 29771427 ~ 29775799 (+) True G80652
AMCG00010423 mRNA upstream 8486 29095337 ~ 29107346 (+) True AMCG00010423
AMCG00010424 mRNA upstream 55792 29048186 ~ 29060040 (+) True AMCG00010424
AMCG00010414 mRNA upstream 532907 28561146 ~ 28582925 (+) True AMCG00010414
AMCG00010411 mRNA upstream 716441 28396667 ~ 28399391 (+) True AMCG00010411
AMCG00010410 mRNA upstream 726663 28376842 ~ 28389169 (+) True AMCG00010410
AMCG00010421 mRNA downstream 105258 29223316 ~ 29228983 (+) True AMCG00010421
AMCG00010420 mRNA downstream 131394 29249452 ~ 29251205 (+) True AMCG00010420
AMCG00010422 mRNA downstream 155153 29273211 ~ 29283590 (+) True AMCG00010422
AMCG00010425 mRNA downstream 197242 29315300 ~ 29317556 (+) True AMCG00010425
AMCG00010431 mRNA downstream 376505 29494563 ~ 29503523 (+) True AMCG00010431
TU100171 other upstream 1209003 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 1240901 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 1558825 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 2721310 26380467 ~ 26394522 (+) False AMCG00010369
TU99785 other upstream 3089529 26012484 ~ 26026303 (+) True G80014
TU100533 other downstream 376559 29494617 ~ 29503451 (+) False AMCG00010431
TU101485 other downstream 4785757 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 5583380 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 5894257 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 6352277 35470335 ~ 35477584 (+) True AMCG00010562

Expression Profile