RNA id: TU100605


Basic Information

Item Value
RNA id TU100605
length 3498
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G80652
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29771427 ~ 29775799 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GctaaaataaagacatgttCGAGAAACACCTCAATTTATAGAATTGCCTAGTTTACAACTGATGAAGACTTACTTTTCCGTAGCTGAGGGGCACTCCTGGTAGTGAGAATCTCAATGAATTTGCTGCAGTCTGTGCCTTTCCTCTTCTCTCCAGCTTCATACAGAGCCTGAAGGGCAAGATGTTGGATCAGACCTTGGCTGGTGTTGCAGACAGACATGCAATGGTGCTGTAAACTCATTTTGACAGCTTTTTGGACTTTACAAGACTATAATGCAGTGTACTCGCCAAGGAGTATGATGGAAAGGGAGCCGATACTCTGCAGAAATAAAAGGCTGaaggtttaaattaatatgaataaactaATGTGTACCAAAGCCTTCCAGCCATGGACTTCATAAGGGTATTCTTCCAATGGCAATGGTCAAAATATTGTTATTCAAGTTAGTCTCTTAGTGTTGACAAAATTCTACCTACAGCTCAAAGTGGAGGATGGCCAGTTCAAATTTAGGCATTAAATCCAGaacttgttaaaaataatggacaaaaacactaaaaactcTTACTCTGGCATCAGCGTCAGCCAGGTCATCATTCACAACTGAATCTTCATTTCTAGTTGCCTGAAGAAAGAACAAAGGGGCTTATGaaatgttatttacatttacatctgCCTGCTGTTCACACAAACTAGCCCATTACCTTGCAAAGGGAGAGCAGTGCGGCCCTAAAATCTCCACTAGTGTCTGACTTGATGTGGTCTTCCAGTTCCTTTTTGTGCTCTGAAGCAGGGAAAAGAAAACTTTAAAGAAAGAGCATGAAGAATATTCATAACACTAGGTGAAGAAACGGAGGTAGCAATATTTACGCTCTTTGTAGACTTTTTTGATCTCTCTGAGCTCATTGTTTGTCCTGGATGCCATAATCTCAATCAAGGTGTCCTCATCAGTCCCGAGACCGCATGGAATTATAAAGCAGCTCGGCATCGTACTGTGCCGGGGTTTTCAACAGAGCCAGGACAACATTTTCAAGTTCGCCGCTGAGTGCAGATTTCAGAGCAGCATCCAGGGGCTGAAACACACATTTACTACATCAGacatagaaaaatatacatctaaAAGCCTTGTGAGAGTTATTCATCTCATCCCTACCTGCCAAGATCCCCCTCCACACACGTTTAGTTTTCACATGAAAAAGGCACAAACTGTGCACAAGAGGAGACCATCTGTAATGCACTATAGATGCAGGGTAATACATCAGCTTCAAGGTTACAGTAACTGCAGATCGTTGACAAAGACAGTAGAAATATCTCTATCTGAACTCTTGCTGTATTACATGTTTTGACATTCCAATTAGAATAgtattaatttatcattatgCTCAACATACGTGACTGAACTAcacttaatgtatttaatttaaagtacattttcaaatggcTTCAGTGATGCTAGAGAGATTTagaatacatgtaaatattgcCCACTTACATCAAAAGCCAATGGTTCTCACCTTTCCAGTGGCCTGCTGATAAGCTGCCTTGATCTGCTGGCGCTGGGCATTGCTTCTCTTCACAAGTACATCAATAATGGTGGTTTCATCCACTCCTGGggaacaattaaacatttagatCTTCCTGCCTAATGGGAATGTGATGCATCAAGTAAattccaaaattaaaaaggcTTCCATGGAGTCAAGTCTCTGCTTACACAGGCTGTCGGTGTGTCAGTGGATTAGGACAAGTAGGGATTCAGAGACAGGGATACAACCCAAAAAATGGGCCACTTGCTGGTCTTTGGAAACCAGAGAATTATACACTGCACATGACTGATAAGTTGGTATAAAATATTCATCTTTGAAAAAAACTTCTATAGTTATCACAGATATGCAGGACCTCttaccttttgtttttattgctttttctaAAACCGCAGCATCAGAACTGGCACTGAACTGTGCATAAGGAGTGACTGTTCCTTGCGGAGAGCCCTGTGAAAAGGTaggtctatttattttaaaacaggccAATGGAAAAATTGGTAAATAAACTAGTTTAACTAACCTCTAGCCCCCTCTCTTATTTTTAAGGCTGAAGCAGACAATTCAAGTTCGTGGGAGTGGCTTGCATTCCTGCTTTATGAATCACCAGCTAAAAGGCCAGATTTTACTCACTACATATACAAAGTTAGTTATATTTTCCAGATGAGGGGGGAAAAGGAAAAGCTAAACTTTTATATAAACCAACAGGattcaaaattgaaaagacTTACTGAATCATCAGGCATTCCCATGTAAAAGGCTTGCTGAAGAAACTCTCTGACGAAGGACATCTTGTGCTATGGGTCTGGTTCTGCTATGGTATCAAATTAAGGACTGCAAAATGAATTGGGCACAAACTCAAATACAAAGATTGAATTACATAAAAGTCCCATTCTGGCTTCAGCACTACTTTCATAACCCACAGGAGGTGCCTATAGAAGACACCTGCATATTGTGAAATTCATACGTGCATTTCATTTACAATCCTGCCTTCTTTTATCTTTAGGGATGCACTGTACAATGCATGATCTAGTTAAAGTGTTTCAACACTGGGTACAAGGTTTTCATTTCAGagaaaacatttcagtagtTTTATGAAGATACAGACACATGTGATCTACAGGTCCTAAAGTAACGttgaatgttaaatgtattggaATATATAGGCGTAACCGTTTGCCTcaggttaaataaaaaagcaagcaTTTAGGGTAGTGGCCTTAAGCAAATATCTTGCAGGCTTCACATACCTGTAATCCTGGATTATTGTTTACCCTTATAAAATATTCACAGCTATGGTTTTATTAGAGCTTTCTACAGAGAGAAAGTCTGCGCTCAGTCAGCCACACCCAAACTTCAAGAAGTCACCCCCATTACATGTATCCTTGGTACTCAAATTGTATAAAATAGTGAAgtacaaagaaacattttgcaCAGTCTTAATCTAtcgtgttaaaaaaaaagtcactttaCATTAACCTTGCTCTGCCCCAGAAATGAAAAAGTCCCACAATTGTTGGCATTTTGTTCACTTCTGAAGCACAGACTGACACGTCACAGGGTAAGACCCAAAGAGAAAAGTCAACAAATGTGCAACTTTTAAGGGGCGGAAGGAGTTGCACGCACATACAGATGTTTTCTATACAGTAACGTTACAgaactttaaaaatgcagatgttACTGCAGCCACTGCAAACTTCGTTCCAAACTACTCTCGAGACTGATGCGGCACCACGCCCATGTTTAACCGCACAAAGAAATAGTGATACAGCTACCTATCTATTGGATTTCTTGCTCCACAACTGCTCAAATAAAATCTACAAGGATCTCTTACCACTTGTCCTGGAAGCCTGAAATCTTTTTCCAGAGTGTCAGACTGAAAGCAGGAGGGAATCGTtacaacatatatttatactcaGATCGCCACACCTAGCAACAGGGCTTGCCATGCACTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100535 lncRNA upstream 287086 29483291 ~ 29484341 (+) True G80599
TU100527 lncRNA upstream 313449 29443110 ~ 29457978 (+) True G80595
TU100505 lncRNA upstream 414397 29352154 ~ 29357030 (+) True G80580
TU100492 lncRNA upstream 467877 29298158 ~ 29303550 (+) True G80567
TU100431 lncRNA upstream 653369 29115832 ~ 29118058 (+) True G80521
TU100619 lncRNA downstream 82974 29858773 ~ 29860382 (+) True G80663
TU100718 lncRNA downstream 530686 30306485 ~ 30307387 (+) True G80746
TU100830 lncRNA downstream 741474 30517273 ~ 30519628 (+) True G80830
TU100916 lncRNA downstream 990538 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA downstream 990538 30766337 ~ 30814741 (+) False AMCG00010467
AMCG00010434 mRNA upstream 219889 29527784 ~ 29551538 (+) True AMCG00010434
AMCG00010432 mRNA upstream 246911 29515759 ~ 29524516 (+) True AMCG00010432
AMCG00010433 mRNA upstream 258009 29509642 ~ 29513418 (+) True AMCG00010433
AMCG00010431 mRNA upstream 267904 29494563 ~ 29503523 (+) True AMCG00010431
AMCG00010425 mRNA upstream 453871 29315300 ~ 29317556 (+) True AMCG00010425
AMCG00010437 mRNA downstream 23441 29799240 ~ 29814090 (+) True AMCG00010437
AMCG00010441 mRNA downstream 73596 29849395 ~ 29864398 (+) True AMCG00010441
AMCG00010440 mRNA downstream 138794 29914593 ~ 29926083 (+) True AMCG00010440
AMCG00010448 mRNA downstream 206391 29982190 ~ 29983125 (+) True AMCG00010448
AMCG00010447 mRNA downstream 216133 29991932 ~ 30021803 (+) True AMCG00010447
TU100533 other upstream 267976 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 1864598 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 1896496 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 2214420 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 3376905 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 4128016 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 4925639 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 5236516 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 5694536 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 6301314 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile