RNA id: TU100997


Basic Information

Item Value
RNA id TU100997
length 2278
lncRNA type sense_over
GC content 0.34
exon number 3
gene id G80969
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31046726 ~ 31070527 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTATTAACTTTAACACGGAGAACAACAAGTTGGcttgctttcagttttattagAACAATACAGGTCTGAGAAAGACATTAAGTTCTTTGATGAATGGAAGGTTCATGAACTTTCTGACCCATAAACTTTAAGTACATATATTCTCAGTGGCAAAATGTCTGTTTGTTATTGAGTATTGTTAGCTATGTATTGTACAGTGAAGCCTCTGCCTTTTCATGCAAGACTGTCAATAGTGAAATATGTATTCTGGAAGATAATGTACACATACGTTCTGGTCCTTTTATAATCTCACCTAATAGAAAAAGACAATTcagtaaaaacaattatatcagGCATTTCTGAAGAGCAATCTCCTTCTTGATTGCATTACTGGAGTTTGTTGAACAGTAGCATAGGGACAGTCACATACTGGTTCTTTCAATCGAAATCATTTCTTGAACACAGTCTAGTCCTTAATTATATCAATTAATTCACCCAGTCCAGAAGCAAGCACTTTTTTGTGAGGACATCCTCTGTAAAAGTCTGTGATCTGCAATAGATGCCCTCGCGAAATGAATCCTGTAGTATTGCCTAGGATCCTACAGCACAGGTTGGCCTTGGAGATCTGTGGGACTTTCTGGGTTCTGTAATATTGTAGCCCTTAAGTAATCAATTGACACATTAATTGAGCTGGTAAAAATCTTCATTCACTGCAGGTAGGCAGGTAGTTAGTGTTCTCTATAAAAGCAGCAGACTTATGGCTCTCTATAGCAGGGGTTGGCCTGTAGAGGTCTATGGTTAAGGCTATTGGATTGTCTAGTGTCCTTCATCATGCCAAAGGAGACATTGTTTGTTAAAAGGGGATTAGGAATACAAATAACCTCTTGCCATAAATTGACCAAAACACtggtatattatattaattatattacacaGAATTAATTCACATAGTTTGTAGTGACCTTTCTACAAGCATGCCAACCACTTTAGACATTTTGAGATTCTGCTGCCTGGTATTTAACTGGAGAAATGTCAAGTCTACTCAAGGCAGCATAACTCTAAAGGAATGTGTACACAGCATTCTACCAGCTATCATATGGCATTGAGTAGAGTCAATAGGACTGGTCATGTCTGTCAAGTTAAATTagctatttatgtatgtatgttcagGGTTTTTCAGATTGTAGGTGTTTGTTGTTTCAATTgactataaatataattttgcagGGGGGGAGGGGTATACTTAAAGTATAAGGTATAGGCTACttattagttttattgttttgctactaaactaattttaatgtattgtttacctcatacatttattaaattgcaACTGATTCAAATGAGAAATGTTGAGAaactcaaatgtaattaattgaattcaaGACTCTTCCCATTAATAGTATTAAAGCTACTCACAAATCGGTCATATCAGATAACAGCATAACAATTTTCCAGctcataattaaatatgcacGTTACTTGAAAGTTTTCATCCTTTGATTTACATATTCCAGGAATTTCCTTTGCAGTACTTCACTGTGTAGTATTTTTAGTGGAATTTTCCAAATTATCCATAGGTTTGGTCTCCAACCATAATATTCTCCAAAGACACTTTCACAAATTCCCCTGCTGTTTTGGTAACAAAATTAGGCTTCTGGTAGTTAGTCATGGGAGTGGAAACGCCAAAGGGAGTaagacactgaaaataaattcaccaaaaatatgaatacagtaGGATGTGGCCTCTGACAATAAGATACACTGATTGTAGCTGCACCATAATATTGAAGAAAACTCCAGCAGAACTCTCTTTGATACCTTGATATCAACACATCtatcaaatgaaataattaattagctAAACTGTTGCTTTACCTAAGGTTATTAATACAGTCAATGTTACCTGAATGATAATTCCTTTTGATTTATATTCCGCTTGAAGCCCTCTTGAAAATCTTTCAACAAAACCCttgtcatttaaaagaaaacaaaaacaattagacatcaaaataaaactttttttttttcacaaacactTTTAATAAGTAACCATGTTTCTAAAACATATACTCACATGTGTAAAGTGCCTAATAATGTGTAATGATTTATGTttcaataatagtaatgatagagacttttgaaattaataagaCCTTTATGAGTCCCTGGCCCTCCTTAAAGACTGAGGCTGGGTTAATTCAGgtgattacatttgtttattagaTCTAAATACAGATGGGACCAAGATAGAAGACCCAAATAAACTGATAGTAAAACTGACTAATAC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100916 lncRNA upstream 231985 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA upstream 231985 30766337 ~ 30814741 (+) False AMCG00010467
TU100911 lncRNA upstream 231985 30792963 ~ 30814741 (+) False AMCG00010467
TU100830 lncRNA upstream 527098 30517273 ~ 30519628 (+) True G80830
TU100718 lncRNA upstream 739339 30306485 ~ 30307387 (+) True G80746
TU101022 lncRNA downstream 36533 31107060 ~ 31107603 (+) True G80988
TU101023 lncRNA downstream 39241 31109768 ~ 31110142 (+) True G80989
TU101064 lncRNA downstream 488189 31558716 ~ 31627547 (+) True G81020
TU101072 lncRNA downstream 701627 31772154 ~ 31772357 (+) True G81026
TU101077 lncRNA downstream 851222 31921749 ~ 31922050 (+) True G81029
AMCG00010476 mRNA upstream 6533 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010475 mRNA upstream 33898 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010474 mRNA upstream 119186 30892385 ~ 30927540 (+) True AMCG00010474
AMCG00010467 mRNA upstream 229123 30793128 ~ 30817603 (+) True AMCG00010467
AMCG00010470 mRNA upstream 287926 30739193 ~ 30758800 (+) True AMCG00010470
AMCG00010480 mRNA downstream 12356 31082883 ~ 31087934 (+) True AMCG00010480
AMCG00010483 mRNA downstream 43995 31114522 ~ 31119247 (+) True AMCG00010483
AMCG00010486 mRNA downstream 359182 31429709 ~ 31589396 (+) True AMCG00010486
AMCG00010484 mRNA downstream 846057 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 854395 31924922 ~ 31938388 (+) True AMCG00010485
TU100533 other upstream 1543275 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3139897 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3171795 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 3489719 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 4652204 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2833288 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3630911 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3941788 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 4399808 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 5006586 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile