RNA id: TU101022



Basic Information


Item Value
RNA id TU101022
length 544
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G80988
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31107060 ~ 31107603 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgtaaaataaacacataaataaagctctcaattaaatatattttctattgcaTCCTAAATGACATACATTGCTAATATAATGTTCACATTTTCCTGAGTGTGACATGAATTTAAAATGGCATATAACTTGCATTTTCTGCTGGTTCAATTTGGGTGCTGTGGTGTTTGAAGCGAATCCATGGTTATGGATGGTCAATGAACcactcagaaaaaaaaaaaaaaaactgagcagGAATTCAGAACACGTCTTAAAGAAATCAACAATATGCCTCTGCCAAGGGCCCACACATGTAATCTCCCAGACAGTGGAGTCATTTTACAAATCAAACCACAGTCTGGTGTTAGAGAGGGATTTCCAGTTTGCAATAATAGGATGCAATTTGCAAACGCATGCAATATCTGAcattccattttaaaacaatttcaccTCGTAAGACCTGCAGAATTAAAAGGTTGTATTATTGACAGAAcctttgtattttttgaaacatttaataacacaaacaaTAGTCTGCTCAGTTTTTGAAtatccaattaaaaataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100997 lncRNA upstream 36533 31046726 ~ 31070527 (+) True G80969
TU100916 lncRNA upstream 292319 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA upstream 292319 30766337 ~ 30814741 (+) False AMCG00010467
TU100911 lncRNA upstream 292319 30792963 ~ 30814741 (+) False AMCG00010467
TU100830 lncRNA upstream 587432 30517273 ~ 30519628 (+) True G80830
TU101023 lncRNA downstream 2165 31109768 ~ 31110142 (+) True G80989
TU101064 lncRNA downstream 451113 31558716 ~ 31627547 (+) True G81020
TU101072 lncRNA downstream 664551 31772154 ~ 31772357 (+) True G81026
TU101077 lncRNA downstream 814146 31921749 ~ 31922050 (+) True G81029
TU101161 lncRNA downstream 1198690 32306293 ~ 32308293 (+) True G81089
AMCG00010480 mRNA upstream 19126 31082883 ~ 31087934 (+) True AMCG00010480
AMCG00010477 mRNA upstream 35440 31064637 ~ 31071620 (+) True AMCG00010477
AMCG00010476 mRNA upstream 66867 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010475 mRNA upstream 94232 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010474 mRNA upstream 179520 30892385 ~ 30927540 (+) True AMCG00010474
AMCG00010483 mRNA downstream 6919 31114522 ~ 31119247 (+) True AMCG00010483
AMCG00010486 mRNA downstream 322106 31429709 ~ 31589396 (+) True AMCG00010486
AMCG00010484 mRNA downstream 808981 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 817319 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010495 mRNA downstream 1002304 32109907 ~ 32126004 (+) True AMCG00010495
TU100533 other upstream 1603609 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3200231 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3232129 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 3550053 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 4712538 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2796212 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3593835 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3904712 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 4362732 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 4969510 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile