RNA id: TU101023


Basic Information

Item Value
RNA id TU101023
length 375
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G80989
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31109768 ~ 31110142 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGCCATCCGTCTGCCTTCATTAGGAAACATGTATCATTAGAAACCAGCCATACTTACAAAGATGTGTTCATAATAACGCACCAATGAATCTCTAACCTACTGACTTGCTTAGGAAAAAATGCTTCTTACCCTAACAAAAATTACGATCGCCTTCTTGTCCTGATATAAACCTCTAAAAGGTATCCGGTTTCCATGCTCATTGTATACAAAGCAATCGTCAGTGTCTGATATCTGAAGTGCAgcaatgcttttctgtttttccagcGGGGATCTGCCAATCTGCTGTGTTACTGGAGGATCTGTAGCCATCTTTTATTTGATTGCAGCTCACAACTTTTCTCAAGTCCTTTGCCCTGGCTATTTTGGGCTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101022 lncRNA upstream 2165 31107060 ~ 31107603 (+) True G80988
TU100997 lncRNA upstream 39241 31046726 ~ 31070527 (+) True G80969
TU100916 lncRNA upstream 295027 30766337 ~ 30814741 (+) False AMCG00010467
TU100917 lncRNA upstream 295027 30766337 ~ 30814741 (+) False AMCG00010467
TU100911 lncRNA upstream 295027 30792963 ~ 30814741 (+) False AMCG00010467
TU101064 lncRNA downstream 448574 31558716 ~ 31627547 (+) True G81020
TU101072 lncRNA downstream 662012 31772154 ~ 31772357 (+) True G81026
TU101077 lncRNA downstream 811607 31921749 ~ 31922050 (+) True G81029
TU101161 lncRNA downstream 1196151 32306293 ~ 32308293 (+) True G81089
TU101177 lncRNA downstream 1262321 32372463 ~ 32372866 (+) True G81103
AMCG00010480 mRNA upstream 21834 31082883 ~ 31087934 (+) True AMCG00010480
AMCG00010477 mRNA upstream 38148 31064637 ~ 31071620 (+) True AMCG00010477
AMCG00010476 mRNA upstream 69575 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010475 mRNA upstream 96940 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010474 mRNA upstream 182228 30892385 ~ 30927540 (+) True AMCG00010474
AMCG00010483 mRNA downstream 4380 31114522 ~ 31119247 (+) True AMCG00010483
AMCG00010486 mRNA downstream 319567 31429709 ~ 31589396 (+) True AMCG00010486
AMCG00010484 mRNA downstream 806442 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 814780 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010495 mRNA downstream 999765 32109907 ~ 32126004 (+) True AMCG00010495
TU100533 other upstream 1606317 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3202939 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3234837 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 3552761 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 4715246 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2793673 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3591296 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3902173 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 4360193 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 4966971 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile