RNA id: TU101064



Basic Information


Item Value
RNA id TU101064
length 282
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G81020
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31558716 ~ 31627547 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caacaaggcattttcggcCACAgaactgccgcatactggatatttttcccttttcacaccattctttgtaaaccctagaaatggttaatgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatataAAGGACTGCTTTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101023 lncRNA upstream 448574 31109768 ~ 31110142 (+) True G80989
TU101022 lncRNA upstream 451113 31107060 ~ 31107603 (+) True G80988
TU100997 lncRNA upstream 488189 31046726 ~ 31070527 (+) True G80969
TU100916 lncRNA upstream 743975 30766337 ~ 30814741 (+) False AMCG00010467
TU101072 lncRNA downstream 144607 31772154 ~ 31772357 (+) True G81026
TU101077 lncRNA downstream 294202 31921749 ~ 31922050 (+) True G81029
TU101161 lncRNA downstream 678746 32306293 ~ 32308293 (+) True G81089
TU101177 lncRNA downstream 744916 32372463 ~ 32372866 (+) True G81103
TU101189 lncRNA downstream 840295 32467842 ~ 32468263 (+) True G81115
AMCG00010483 mRNA upstream 439469 31114522 ~ 31119247 (+) True AMCG00010483
AMCG00010480 mRNA upstream 470782 31082883 ~ 31087934 (+) True AMCG00010480
AMCG00010477 mRNA upstream 487096 31064637 ~ 31071620 (+) True AMCG00010477
AMCG00010476 mRNA upstream 518523 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010475 mRNA upstream 545888 30993603 ~ 31012828 (+) True AMCG00010475
AMCG00010484 mRNA downstream 289037 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 297375 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010495 mRNA downstream 482360 32109907 ~ 32126004 (+) True AMCG00010495
AMCG00010496 mRNA downstream 534718 32162265 ~ 32173395 (+) True AMCG00010496
AMCG00010493 mRNA downstream 624894 32252441 ~ 32283770 (+) True AMCG00010493
TU100533 other upstream 2055265 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3651887 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3683785 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 4001709 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 5164194 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2276268 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 3073891 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3384768 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 3842788 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 4449566 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile