RNA id: TU101072



Basic Information


Item Value
RNA id TU101072
length 204
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G81026
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31772154 ~ 31772357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agtcagggattttgtaggcatatagtcaggcgtatgattaaacaattataccaaacaggtgctaatgatcatcaattcaatatgtaggttgaaacacagtcattaactgaaacagaaacagctgtgtaggaggaataaaactgggtgaggaacagccaaactcagctaacaaggtgaggttgctgaagacagtttactgtcaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101064 lncRNA upstream 144607 31558716 ~ 31627547 (+) True G81020
TU101023 lncRNA upstream 662012 31109768 ~ 31110142 (+) True G80989
TU101022 lncRNA upstream 664551 31107060 ~ 31107603 (+) True G80988
TU100997 lncRNA upstream 701627 31046726 ~ 31070527 (+) True G80969
TU100917 lncRNA upstream 957413 30766337 ~ 30814741 (+) False AMCG00010467
TU101077 lncRNA downstream 149392 31921749 ~ 31922050 (+) True G81029
TU101161 lncRNA downstream 533936 32306293 ~ 32308293 (+) True G81089
TU101177 lncRNA downstream 600106 32372463 ~ 32372866 (+) True G81103
TU101189 lncRNA downstream 695485 32467842 ~ 32468263 (+) True G81115
TU101202 lncRNA downstream 701676 32474033 ~ 32530266 (+) True AMCG00010497
AMCG00010486 mRNA upstream 182758 31429709 ~ 31589396 (+) True AMCG00010486
AMCG00010483 mRNA upstream 652907 31114522 ~ 31119247 (+) True AMCG00010483
AMCG00010480 mRNA upstream 684220 31082883 ~ 31087934 (+) True AMCG00010480
AMCG00010477 mRNA upstream 700534 31064637 ~ 31071620 (+) True AMCG00010477
AMCG00010476 mRNA upstream 731961 31037640 ~ 31040193 (+) True AMCG00010476
AMCG00010484 mRNA downstream 144227 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010485 mRNA downstream 152565 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010495 mRNA downstream 337550 32109907 ~ 32126004 (+) True AMCG00010495
AMCG00010496 mRNA downstream 389908 32162265 ~ 32173395 (+) True AMCG00010496
AMCG00010493 mRNA downstream 480084 32252441 ~ 32283770 (+) True AMCG00010493
TU100533 other upstream 2268703 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 3865325 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 3897223 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 4215147 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 5377632 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 2131458 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 2929081 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 3239958 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 3697978 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 4304756 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile