RNA id: TU101177



Basic Information


Item Value
RNA id TU101177
length 404
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G81103
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 32372463 ~ 32372866 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagatgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaatgtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatcctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcatcCAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101161 lncRNA upstream 64170 32306293 ~ 32308293 (+) True G81089
TU101077 lncRNA upstream 450413 31921749 ~ 31922050 (+) True G81029
TU101072 lncRNA upstream 600106 31772154 ~ 31772357 (+) True G81026
TU101064 lncRNA upstream 744916 31558716 ~ 31627547 (+) True G81020
TU101023 lncRNA upstream 1262321 31109768 ~ 31110142 (+) True G80989
TU101189 lncRNA downstream 94976 32467842 ~ 32468263 (+) True G81115
TU101202 lncRNA downstream 101167 32474033 ~ 32530266 (+) True AMCG00010497
TU101243 lncRNA downstream 203783 32576649 ~ 32674654 (+) True G81149
TU101326 lncRNA downstream 595395 32968261 ~ 32968507 (+) True G81215
TU101342 lncRNA downstream 654031 33026897 ~ 33027960 (+) True G81226
AMCG00010493 mRNA upstream 88693 32252441 ~ 32283770 (+) True AMCG00010493
AMCG00010496 mRNA upstream 199068 32162265 ~ 32173395 (+) True AMCG00010496
AMCG00010495 mRNA upstream 246459 32109907 ~ 32126004 (+) True AMCG00010495
AMCG00010485 mRNA upstream 434075 31924922 ~ 31938388 (+) True AMCG00010485
AMCG00010484 mRNA upstream 451330 31916584 ~ 31921133 (+) True AMCG00010484
AMCG00010494 mRNA downstream 96156 32469022 ~ 32495238 (+) True AMCG00010494
AMCG00010497 mRNA downstream 135949 32508815 ~ 32526898 (+) False AMCG00010497
AMCG00010501 mRNA downstream 292650 32665516 ~ 32689744 (+) True AMCG00010501
AMCG00010503 mRNA downstream 432742 32805608 ~ 32823998 (+) True AMCG00010503
AMCG00010502 mRNA downstream 472525 32845391 ~ 32857825 (+) True AMCG00010502
TU100533 other upstream 2869012 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 4465634 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 4497532 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 4815456 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 5977941 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 1530949 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 2328572 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 2639449 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 3097469 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 3704247 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile