RNA id: TU101243



Basic Information


Item Value
RNA id TU101243
length 214
lncRNA type sense_over
GC content 0.48
exon number 3
gene id G81149
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 32576649 ~ 32674654 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


acaaaatctGTggagggagctgaaggttcgagttgccaaacgtcagcctcgaaatcttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagccgaagggGTCAAATACTCATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101202 lncRNA upstream 46383 32474033 ~ 32530266 (+) True AMCG00010497
TU101189 lncRNA upstream 108386 32467842 ~ 32468263 (+) True G81115
TU101177 lncRNA upstream 203783 32372463 ~ 32372866 (+) True G81103
TU101161 lncRNA upstream 268356 32306293 ~ 32308293 (+) True G81089
TU101077 lncRNA upstream 654599 31921749 ~ 31922050 (+) True G81029
TU101326 lncRNA downstream 293607 32968261 ~ 32968507 (+) True G81215
TU101342 lncRNA downstream 352243 33026897 ~ 33027960 (+) True G81226
TU101405 lncRNA downstream 636198 33310852 ~ 33315569 (+) True G81279
TU101487 lncRNA downstream 1261760 33936414 ~ 33938237 (+) True AMCG00010529
TU101528 lncRNA downstream 1358050 34032704 ~ 34035798 (+) True G81372
AMCG00010497 mRNA upstream 49751 32508815 ~ 32526898 (+) False AMCG00010497
AMCG00010494 mRNA upstream 81411 32469022 ~ 32495238 (+) True AMCG00010494
AMCG00010493 mRNA upstream 292879 32252441 ~ 32283770 (+) True AMCG00010493
AMCG00010496 mRNA upstream 403254 32162265 ~ 32173395 (+) True AMCG00010496
AMCG00010495 mRNA upstream 450645 32109907 ~ 32126004 (+) True AMCG00010495
AMCG00010503 mRNA downstream 130954 32805608 ~ 32823998 (+) True AMCG00010503
AMCG00010502 mRNA downstream 170737 32845391 ~ 32857825 (+) True AMCG00010502
AMCG00010513 mRNA downstream 366341 33040995 ~ 33057801 (+) True AMCG00010513
AMCG00010512 mRNA downstream 403177 33077831 ~ 33091942 (+) True AMCG00010512
AMCG00010510 mRNA downstream 427306 33101960 ~ 33103367 (+) True AMCG00010510
TU100533 other upstream 3073198 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 4669820 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 4701718 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 5019642 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 6182127 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 1229161 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 2026784 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 2337661 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 2795681 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 3402459 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile