RNA id: TU101405


Basic Information

Item Value
RNA id TU101405
length 1676
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G81279
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33310852 ~ 33315569 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgacgtcagcgcaggtttgtcctctttttcCATTTCGTTGgacctgagaacgtgagctttctgtgtctgtgtttgtataaacattcaaactgcgtatttcggctggctggctcacttcatagtgttgttcaccactgttttcgctacacatcgtctctgtcttgtgtgtgtttagttattattgatagctaatcccgattctgtcccatCCGCACACAGGAGGTCCGGCTgagctttcggtttcagtttcgttcacaagaagagccgttttaaaatattagtcgtgtttatatagtgttatatatattctgactgcttgctgtgttggttttttgtccacaggaccttttcctccgcagcaggagtgctagcagcggcagtaaaattcgaggcccggctgcccggtaTGAGGTGCTGCTCTGCCGGCTTGCACCCACACTACAGCCtgcagctgcggctgtaggagatcttgctctctcagttcactgagaacgagcactgctagccctccccggtctgtgtgtgtaggcctcggttttagatcccgctacggctggtggtctactaccctcggcccccagACTCCgtgtcacccggtgtccccggaaacccccaGCACACACAATGAGCAGCATCAATCACATTGCCTAAATCTACATCGTGGCAGCCGTGCTGTGTTTTACTGATGATTAATAATTGTGCCATATATTCAAAAACAGCTACCAAATCCAAGACCTAATATGTTTCTtcagttaaatattgaatttcaagCCACAACTCACATACTGATACGGCAAaccaaccatgaagaccaaggcgTTTTCTAAACAAATCAGAGAAAATGTGGTTGAGAAACACAGATCAGGGGAAGGTTACATGAAAATTTCAAAGTGACCATATACAGTGAAGACCATCATTAAGAACTGGAATGTGCTTCATACCACCCAGTCACTACCCATGTCTGAAATGGGACTCAGTGTTAATACATCAACACTATCCCAGTCCCTACATAAAGCTGGCCTGGGTGAGGGAGTGGCAAGCAAGCAACCATTCCTGAAAATAATCCATCTTAAATCTCGTATGGGGTTTGCGACAAAGCATGTAAATGATACTGCAGACATGTGGCAAAAGGTTTTGTCATCAGATGAGACAAATTCAAAGCATTATATCTGGCGCaagcccaacacagcacataacccagtcaacaccatcccacCGGTCAAGCATGGTGATGGCAGAATCATGTTATGAGGATACTTCATATAAACAAGGACTGGGATGCTTGTTAGGATTGAGTGGGAAATGGATGGTGGGAATCTAAAACTGAAttgagaaattacattttagggGGACAATAACATGGAGTACAAGGCCAAAGGCACAGAGAAATGggttaaaaataagaaagtgaatgtccttgagtgtcAAAGTCCAAACTTGAATCCAATATTGCAAGCAATTTTGTGAGGAGGAATTGGCAAAAATTACACCACCCCACTGTGCAAAGCAGGTCAAAACCTATCCTAAAAGACTCACAGCAGTCAGGTGCTGATGCAGGGGGCTGAACACTTACAGAATCAgtcaatttcaaatgaaatatatttgcatgttttggtgacattcagagcgtatatacagtatatataaagcagcaatttcatatattaataaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101342 lncRNA upstream 282892 33026897 ~ 33027960 (+) True G81226
TU101326 lncRNA upstream 342345 32968261 ~ 32968507 (+) True G81215
TU101243 lncRNA upstream 636198 32576649 ~ 32674654 (+) True G81149
TU101202 lncRNA upstream 780586 32474033 ~ 32530266 (+) True AMCG00010497
TU101189 lncRNA upstream 842589 32467842 ~ 32468263 (+) True G81115
TU101487 lncRNA downstream 620845 33936414 ~ 33938237 (+) True AMCG00010529
TU101528 lncRNA downstream 717135 34032704 ~ 34035798 (+) True G81372
TU101539 lncRNA downstream 787269 34102838 ~ 34104640 (+) True G81383
TU101567 lncRNA downstream 880498 34196067 ~ 34196426 (+) True G81407
TU101639 lncRNA downstream 1364407 34679976 ~ 34680716 (+) True G81474
AMCG00010511 mRNA upstream 201142 33105932 ~ 33109710 (+) True AMCG00010511
AMCG00010510 mRNA upstream 207485 33101960 ~ 33103367 (+) True AMCG00010510
AMCG00010512 mRNA upstream 218910 33077831 ~ 33091942 (+) True AMCG00010512
AMCG00010513 mRNA upstream 253051 33040995 ~ 33057801 (+) True AMCG00010513
AMCG00010502 mRNA upstream 453027 32845391 ~ 32857825 (+) True AMCG00010502
AMCG00010519 mRNA downstream 223281 33538850 ~ 33583439 (+) True AMCG00010519
AMCG00010517 mRNA downstream 285974 33601543 ~ 33608079 (+) True AMCG00010517
AMCG00010518 mRNA downstream 301453 33617022 ~ 33638956 (+) True AMCG00010518
AMCG00010520 mRNA downstream 344248 33659817 ~ 33670180 (+) True AMCG00010520
AMCG00010529 mRNA downstream 619026 33934595 ~ 33937940 (+) False AMCG00010529
TU100533 other upstream 3807401 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 5404023 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 5435921 27869457 ~ 27874931 (+) False AMCG00010393
TU100084 other upstream 5753845 27556415 ~ 27557007 (+) True G80249
TU99961 other upstream 6916330 26380467 ~ 26394522 (+) False AMCG00010369
TU101485 other downstream 588246 33903815 ~ 33935416 (+) False AMCG00010529
TU101662 other downstream 1385869 34701438 ~ 34707394 (+) True G81496
TU101759 other downstream 1696746 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 2154766 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 2761544 36077113 ~ 36079892 (+) True AMCG00010578

Expression Profile