RNA id: TU101758


Basic Information

Item Value
RNA id TU101758
length 2568
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G81575
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35008572 ~ 35012190 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAAATAAGCTTTATTGTAGTGATGATACTGATACACAAATCTACAAAGTCCTTATAAATTGTTATAACAGGATGTTAAAAATAGGTTTTGTAAAAAATCATTgtatctgttaaaaaaacaaagcttttttttggtattgctGTACAGGACACTGGTAACAAAATCTTTGTACAAACACTGTCAGTATGTATGGAGGGTATTTCAGAAAGATTGTCTGTCTCACAGTACCAAGGCTTAAAAGCACCAGTAAAATACCCTTTAGTGAGGGTAGTAAAGACTTACACAACATACAAACTTTCCTGTAAAATATTCTAATAACTAAGAGGCATTCATTGTACACACATACCTTTTGTATAGAATAatagtaaaatgaaaaatatggtATATAAACTACAGTAATACTTATGTACCAGGAATGTAATGAATCTTTCCTCAAAAATCCAAGAACTACCCATCGCAATTTTAATGTGAATATAACATTAACCCTTTGAATCTGAGCAGTACCATTCGTTCTTGACGAGCACCCCATGGAAATGTTTCAGAGAGAAAACACATCGGACAGTTATGTGTTCTTTGAGCTGCCCACACTGGAGTTACATGTTAAAAGCACCTAGCTAAGAATGAGGTGTTGTGGTTGTTAATTACAGTACTGATAGACCTGTGTTGATTTGACAATACTAACAGTCAAGGTATTTTGCTATAATGAACATTTTTAGCATATGATAAATATGATCAATTTTGGTATGTTCCTGCAAAAGGCTTCACAGAAACATGATTTGAACCACTTCAATGTGTAAGAATGCAATTGTAGCCATTTTAGCTATTTATTACTTTGGTGGGTAAATCACAATTCTCTCAAAAGGATTACAAAAGCTTAATTGAAAACATAGaagggaaacaaatatatacaggcTTAAAAAAACCTGAGgatagtttttctgtttttcacatgaataaatataaaaaaatgattattttaaaaacatcgCCATTGTAAAATGACACTTTAAGTAAATTTACAATGTTTCACCAATCTGACAGTATTGTCACTTCAGCAGACAATATAATACCCTTGTTTGGGATTTTTGTAAAGTCTGCAAGAAAAGCCATTTTCTGTTATGTATACCTGTAAAAGGACACGTTGAATGTTGAATTGATTGTCTATCGTGGCCTTTGATTTGACTTTAACAATCTGGTTTACAAACTTTATGAAAGTTTGTCACAATATTCACAGAAAGAATATGGCTTGGTTGTCAGGCTTAGTATTATATCAAATATGTGGAGTCTGATAATGCACtactgatcatttaaaaataattatctgaATAAGCCTCTGAAAATTCAGGCATGAAGTGGTTTTTAGCTTAATGTTGGTATTTACAGGCTGCCAACATTTCACAACCGATGTGAGTGATGAGACTAGTGATAATTACAAGAGGCGGGGAGGGGGGATTCTGCTTTGATCAGAAggttgtgtggggggggggttatagCTGTGGCATTACCTCAAGCACTGATACAAATTGCATGTGATCCAATACGTGCAAGCGTGAGAATCAATCCAAATACGGTCAGTGGGCAGCTCTGGtagcatatattttatatatatatatttgtatatattccttttttatttcataaaatgaaaacaggtgTAGCAATATATAGAGACGAACCTTAATTGTTAATTGTCCAAGACCTGAAAGCTGCAAACAGGATACATTTACAGTTCCATATACCAGACATTGTCTGaccatatatataatgtaaataaatacacatctataaacacaaaataataaaaacatatatggCAAAACACCTCAAATGTTAGACTGTTACACTGAGAAATGGCTCATGTTTTTGTCCCAACACAGTACTAGGATACTGTTAAATGTGAAGATGAACATCATTAGATCATATTGCTTACTCTAAATTCAATCCATTAACAAACAGTTATCTTGGGTATCAGTACAATGTCGGCTGGGTGACGTGATGAACACGTCCTGGTCATGGAGTTTGGTCACGCAGTCCTCGATAGGGAATGGGAGAGGTCTCCGTCTGTTTAAAGTCAATGATTTAAAACGTTTCTTTTCTCCTGATACAGTCTGTTCATGACGATAAATAAAGACCAATCTGAACGAGTCACAGATCGACTCTCTGGATGGAAACATTGCCGTGATCCACCCGGGTCTCACTGCAGCTTGATCTGCAGCCTCATCCTCAGGCTCTCGCCCAGCTCTCCCGACAGGTAGTCCGTGTCTTTAGAGTCCTCCAGTTTCTGCAGCTCCTGCTGTCTGTACAGAGGGACACTGCTGATCTCTAAGTCGTAGGTCCCAGGTAGGGCCTTCCTCTTGGCCGTGTGCAGGTAACTGAGGCCCTCCCGCTGGTGGATGCGGAACAGCCCGTCCTCGTTGCCGGAGGAAATGACATAGCGCACGTGATTGGTGAGAGGCTGGATGGCCGGGATGAGCTCCAGGATGTGCTCTTTGGGGTTCAGCTCCGAGATGTTGAGACTCAGAACCACAGGGCTGTCGATGTCCAGGCTGGCCAAGCTCACTGGCTG

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101677 lncRNA upstream 162696 34756519 ~ 34845876 (+) False AMCG00010545
TU101655 lncRNA upstream 312268 34694859 ~ 34696304 (+) True G81489
TU101644 lncRNA upstream 322810 34684289 ~ 34685762 (+) True G81479
TU101639 lncRNA upstream 327856 34679976 ~ 34680716 (+) True G81474
TU101567 lncRNA upstream 812146 34196067 ~ 34196426 (+) True G81407
TU101760 lncRNA downstream 765 35012955 ~ 35013654 (+) True G81577
TU101763 lncRNA downstream 3885 35016075 ~ 35016334 (+) True G81580
TU101764 lncRNA downstream 4719 35016909 ~ 35017132 (+) True G81581
TU101765 lncRNA downstream 27067 35039257 ~ 35039467 (+) True G81582
TU101766 lncRNA downstream 38215 35050405 ~ 35050612 (+) True G81583
AMCG00010548 mRNA upstream 4684 34962348 ~ 35003888 (+) True AMCG00010548
AMCG00010550 mRNA upstream 77417 34930547 ~ 34931155 (+) True AMCG00010550
AMCG00010547 mRNA upstream 104210 34903503 ~ 34904362 (+) True AMCG00010547
AMCG00010546 mRNA upstream 151051 34847908 ~ 34857521 (+) True AMCG00010546
AMCG00010545 mRNA upstream 163721 34798087 ~ 34844851 (+) True AMCG00010545
AMCG00010553 mRNA downstream 87925 35100115 ~ 35107055 (+) True AMCG00010553
AMCG00010552 mRNA downstream 109424 35121614 ~ 35139130 (+) True AMCG00010552
AMCG00010551 mRNA downstream 130376 35142566 ~ 35149632 (+) True AMCG00010551
AMCG00010557 mRNA downstream 170741 35182931 ~ 35183883 (+) True AMCG00010557
AMCG00010555 mRNA downstream 177193 35189383 ~ 35193509 (+) True AMCG00010555
TU101662 other upstream 301178 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1073156 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5505121 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 7101743 27906497 ~ 27906829 (+) True G80326
TU100109 other upstream 7133641 27869457 ~ 27874931 (+) False AMCG00010393
TU101759 other downstream 125 35012315 ~ 35012693 (+) True G81576
TU101832 other downstream 458145 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 1064923 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 1079349 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 2218238 37230428 ~ 37251169 (+) True G81971

Expression Profile